miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 3' -63.8 NC_002794.1 + 194311 0.66 0.619527
Target:  5'- cGCCa--GCGCCUGCCGcaGCggaUCGCGCc -3'
miRNA:   3'- -UGGccaCGCGGACGGC--UGg--AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 193365 0.73 0.241486
Target:  5'- aGCCGGUGCcacggGCCgcgcuccucGCCGucguccGCCUCGCGCUc -3'
miRNA:   3'- -UGGCCACG-----CGGa--------CGGC------UGGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 192728 0.68 0.48869
Target:  5'- cGCCaGGUcGUcgGCCaGCCGguacACCUCGCGCUc -3'
miRNA:   3'- -UGG-CCA-CG--CGGaCGGC----UGGAGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 192639 0.66 0.638711
Target:  5'- gGCCGcuccagccGCGCC-GCCGcGCgCUCGCGCg -3'
miRNA:   3'- -UGGCca------CGCGGaCGGC-UG-GAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 185318 0.66 0.638711
Target:  5'- cCCaGUGuCGCCUccacacccgcGUCGACCgcUCGCGCg -3'
miRNA:   3'- uGGcCAC-GCGGA----------CGGCUGG--AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 184930 0.67 0.5436
Target:  5'- aGCCGGcgGuCGuCCUGCCGcagcugcgccgGCC-CGCGCa -3'
miRNA:   3'- -UGGCCa-C-GC-GGACGGC-----------UGGaGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 183666 0.66 0.638711
Target:  5'- cGCCGGgcccgaGCGCCgacggGUCGAgcgcCCgccgCGCGCg -3'
miRNA:   3'- -UGGCCa-----CGCGGa----CGGCU----GGa---GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 183177 0.68 0.49677
Target:  5'- aGCCGGUcggggaccgagacGCGCCgccacGCCGGCggCGCGUUc -3'
miRNA:   3'- -UGGCCA-------------CGCGGa----CGGCUGgaGCGCGA- -5'
10856 3' -63.8 NC_002794.1 + 180273 0.68 0.487796
Target:  5'- cGCCGGUcuccucgcggcccGCGCCgccgcaacacGCCGGCCg-GCGCg -3'
miRNA:   3'- -UGGCCA-------------CGCGGa---------CGGCUGGagCGCGa -5'
10856 3' -63.8 NC_002794.1 + 154340 0.7 0.372253
Target:  5'- cCCGG-GUGCCgcgGCCGAgCUCccGCGCg -3'
miRNA:   3'- uGGCCaCGCGGa--CGGCUgGAG--CGCGa -5'
10856 3' -63.8 NC_002794.1 + 152143 0.71 0.355743
Target:  5'- aGCCGGUucaacccgcuccaGCGCCUgcgggccGCCGACCU-GUGCa -3'
miRNA:   3'- -UGGCCA-------------CGCGGA-------CGGCUGGAgCGCGa -5'
10856 3' -63.8 NC_002794.1 + 151738 0.66 0.629118
Target:  5'- gUCGGc-CGCCgGUCG-CCUCGCGCg -3'
miRNA:   3'- uGGCCacGCGGaCGGCuGGAGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 151692 0.66 0.638711
Target:  5'- uUgGGU-CGCCccGCCGGCCgagCGCGCc -3'
miRNA:   3'- uGgCCAcGCGGa-CGGCUGGa--GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 150537 0.73 0.252627
Target:  5'- aGCCGGgccgGCGCCaugGCCG-UCUCgGCGCUg -3'
miRNA:   3'- -UGGCCa---CGCGGa--CGGCuGGAG-CGCGA- -5'
10856 3' -63.8 NC_002794.1 + 149712 0.67 0.56237
Target:  5'- gGCgGGUGgGCC-GCCuGCCUCGCuacgGCg -3'
miRNA:   3'- -UGgCCACgCGGaCGGcUGGAGCG----CGa -5'
10856 3' -63.8 NC_002794.1 + 147987 0.68 0.48869
Target:  5'- -gCGGUGUcCCUGCUGGCCUucgucCGCGUc -3'
miRNA:   3'- ugGCCACGcGGACGGCUGGA-----GCGCGa -5'
10856 3' -63.8 NC_002794.1 + 147336 0.66 0.604202
Target:  5'- gGCCGaucucGUGCGCCgcUGCCaGACCgaauacuuugacgucUCGUGCg -3'
miRNA:   3'- -UGGC-----CACGCGG--ACGG-CUGG---------------AGCGCGa -5'
10856 3' -63.8 NC_002794.1 + 145516 0.67 0.552961
Target:  5'- --gGGUGCGCgagGCCGGCCcgaGCGCc -3'
miRNA:   3'- uggCCACGCGga-CGGCUGGag-CGCGa -5'
10856 3' -63.8 NC_002794.1 + 144754 0.67 0.571821
Target:  5'- cACCGGUGguucugggaaCGCagcugGCCGGCgUCGcCGCUg -3'
miRNA:   3'- -UGGCCAC----------GCGga---CGGCUGgAGC-GCGA- -5'
10856 3' -63.8 NC_002794.1 + 144437 0.66 0.629118
Target:  5'- cGCCGaGUGCaGCCgUGCgCGcACCU-GCGCg -3'
miRNA:   3'- -UGGC-CACG-CGG-ACG-GC-UGGAgCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.