miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 5' -54.3 NC_002794.1 + 190736 0.66 0.972599
Target:  5'- gCAGCGCcCGCcgccgucucgacgggGGCGGcggccgcGCGUCCCGGu -3'
miRNA:   3'- aGUCGUGaGCG---------------UCGUCu------UGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 92315 0.66 0.971484
Target:  5'- -gGGCGCggGCGGCGGGGg--CCCGGg -3'
miRNA:   3'- agUCGUGagCGUCGUCUUguaGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 158114 0.66 0.971484
Target:  5'- --cGCGC-CGUAGCGGGAgA-CCCGGu -3'
miRNA:   3'- aguCGUGaGCGUCGUCUUgUaGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 93854 0.66 0.971484
Target:  5'- aCGGcCGCg-GCGGC-GAGCcgCCCGAg -3'
miRNA:   3'- aGUC-GUGagCGUCGuCUUGuaGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 48246 0.66 0.971484
Target:  5'- uUCGGC---CGCAGCAGGAUcagCCCGc -3'
miRNA:   3'- -AGUCGugaGCGUCGUCUUGua-GGGCu -5'
10856 5' -54.3 NC_002794.1 + 85873 0.66 0.971484
Target:  5'- -aAGCguGCUUGguGCAGAcugaACGcgCCCGAa -3'
miRNA:   3'- agUCG--UGAGCguCGUCU----UGUa-GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 49067 0.66 0.968556
Target:  5'- gCAGCacgACUCGCGGUaccAGAagACGUaCCCGu -3'
miRNA:   3'- aGUCG---UGAGCGUCG---UCU--UGUA-GGGCu -5'
10856 5' -54.3 NC_002794.1 + 114016 0.66 0.968556
Target:  5'- -gAGCgACUCGUacaGGCGGGGCAgcggccgCCCGu -3'
miRNA:   3'- agUCG-UGAGCG---UCGUCUUGUa------GGGCu -5'
10856 5' -54.3 NC_002794.1 + 82070 0.66 0.968556
Target:  5'- cUCGGC-CUCGcCGGCccucucGGGCAcCCCGAc -3'
miRNA:   3'- -AGUCGuGAGC-GUCGu-----CUUGUaGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 117904 0.66 0.968556
Target:  5'- aCGGCcaGCUgGUGGaucgucuuGAACGUCCCGAg -3'
miRNA:   3'- aGUCG--UGAgCGUCgu------CUUGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 90976 0.66 0.968556
Target:  5'- uUCGGCGuggcCUCGUaccgggccgaGGCGGAGCGggCCGAc -3'
miRNA:   3'- -AGUCGU----GAGCG----------UCGUCUUGUagGGCU- -5'
10856 5' -54.3 NC_002794.1 + 31116 0.66 0.96542
Target:  5'- -aGGUACauggCGgAGUAGAGCAgCCCGGa -3'
miRNA:   3'- agUCGUGa---GCgUCGUCUUGUaGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 117752 0.66 0.96542
Target:  5'- gUCcGCGCguggugCGCAGCAGGuCGUCCa-- -3'
miRNA:   3'- -AGuCGUGa-----GCGUCGUCUuGUAGGgcu -5'
10856 5' -54.3 NC_002794.1 + 95030 0.66 0.96542
Target:  5'- gCGGCAuCUCGCcGguGGcgGCG-CCCGAg -3'
miRNA:   3'- aGUCGU-GAGCGuCguCU--UGUaGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 55306 0.66 0.96542
Target:  5'- gCGGCG-UCGCGGCGGGcgcggGCGgcUUCCGAg -3'
miRNA:   3'- aGUCGUgAGCGUCGUCU-----UGU--AGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 123859 0.66 0.96542
Target:  5'- gUCAGCcacguGCUCGCcgAGCGGGuccagcugcuGCGUUCCGc -3'
miRNA:   3'- -AGUCG-----UGAGCG--UCGUCU----------UGUAGGGCu -5'
10856 5' -54.3 NC_002794.1 + 58058 0.66 0.965094
Target:  5'- gUCGGCggccccgGCg-GCGGCGGGACGggcggCCCGGc -3'
miRNA:   3'- -AGUCG-------UGagCGUCGUCUUGUa----GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 33933 0.66 0.96207
Target:  5'- aUCAuGCGCUUcCuGCuGAACAUCuCCGAg -3'
miRNA:   3'- -AGU-CGUGAGcGuCGuCUUGUAG-GGCU- -5'
10856 5' -54.3 NC_002794.1 + 36875 0.66 0.96207
Target:  5'- gCAGcCGCgccagguagCGCGuGCAGAGCGUCCaGAg -3'
miRNA:   3'- aGUC-GUGa--------GCGU-CGUCUUGUAGGgCU- -5'
10856 5' -54.3 NC_002794.1 + 36332 0.66 0.96207
Target:  5'- aCGGCg--CGCAGUcGAGCAaCCCGGc -3'
miRNA:   3'- aGUCGugaGCGUCGuCUUGUaGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.