miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 5' -54.3 NC_002794.1 + 40867 1.09 0.004676
Target:  5'- uUCAGCACUCGCAGCAGAACAUCCCGAu -3'
miRNA:   3'- -AGUCGUGAGCGUCGUCUUGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 116274 0.75 0.556167
Target:  5'- gCGGCG-UCGUAGUAGAACGUgCCGAu -3'
miRNA:   3'- aGUCGUgAGCGUCGUCUUGUAgGGCU- -5'
10856 5' -54.3 NC_002794.1 + 77463 0.75 0.566239
Target:  5'- uUCAGCA--CGCAGCGGAACcugcuguuUCCCGGg -3'
miRNA:   3'- -AGUCGUgaGCGUCGUCUUGu-------AGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 137609 0.75 0.575343
Target:  5'- cCGGCGgUCGCGGCGGcggugcccacgacGACGUCCUGGc -3'
miRNA:   3'- aGUCGUgAGCGUCGUC-------------UUGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 108444 0.75 0.586515
Target:  5'- gCGGCACUCGCGGCG--GCggCCCGc -3'
miRNA:   3'- aGUCGUGAGCGUCGUcuUGuaGGGCu -5'
10856 5' -54.3 NC_002794.1 + 113611 0.73 0.686654
Target:  5'- cCAGCGC-CGCGGCcagguucagguuGAACGUCUCGAg -3'
miRNA:   3'- aGUCGUGaGCGUCGu-----------CUUGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 36724 0.73 0.698777
Target:  5'- -uGGCGCUCGCGcagcccguucacGUAGAAC-UCCCGGu -3'
miRNA:   3'- agUCGUGAGCGU------------CGUCUUGuAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 46663 0.72 0.728699
Target:  5'- aCAGCGCUCGCAGUcgcacaAGAucGCcgCCCu- -3'
miRNA:   3'- aGUCGUGAGCGUCG------UCU--UGuaGGGcu -5'
10856 5' -54.3 NC_002794.1 + 184366 0.72 0.738518
Target:  5'- gCGGCGCUCccaGCAGCGGAGgCAgucgaagacCCCGAa -3'
miRNA:   3'- aGUCGUGAG---CGUCGUCUU-GUa--------GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 31886 0.72 0.748243
Target:  5'- aCAGUACUCGacCAGCGGcGCGUCgCUGAu -3'
miRNA:   3'- aGUCGUGAGC--GUCGUCuUGUAG-GGCU- -5'
10856 5' -54.3 NC_002794.1 + 136703 0.72 0.748243
Target:  5'- cCAGCGCcCGguGCAGGcGCcgGUCCCGGc -3'
miRNA:   3'- aGUCGUGaGCguCGUCU-UG--UAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 54286 0.72 0.767379
Target:  5'- --uGCAgaCGCAGCAGGGCggCCCGc -3'
miRNA:   3'- aguCGUgaGCGUCGUCUUGuaGGGCu -5'
10856 5' -54.3 NC_002794.1 + 122501 0.71 0.77677
Target:  5'- gUCGGCGC-CGCAGgAGGGCuUCuCCGGc -3'
miRNA:   3'- -AGUCGUGaGCGUCgUCUUGuAG-GGCU- -5'
10856 5' -54.3 NC_002794.1 + 192150 0.71 0.812948
Target:  5'- cCGGCGCggUCGCGGCGGAGCcugcgguagGUCCggCGAa -3'
miRNA:   3'- aGUCGUG--AGCGUCGUCUUG---------UAGG--GCU- -5'
10856 5' -54.3 NC_002794.1 + 90462 0.7 0.821602
Target:  5'- uUCGGCGaggccgcgCGCGGCGGGGCcgccGUCCCGc -3'
miRNA:   3'- -AGUCGUga------GCGUCGUCUUG----UAGGGCu -5'
10856 5' -54.3 NC_002794.1 + 37504 0.69 0.862129
Target:  5'- gCAcGCGCguguggucgCGCAGCAccACGUCCCGGc -3'
miRNA:   3'- aGU-CGUGa--------GCGUCGUcuUGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 145332 0.69 0.869637
Target:  5'- gCGGCGCUCG-GGCccGAGCGggCCCGAg -3'
miRNA:   3'- aGUCGUGAGCgUCGu-CUUGUa-GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 70672 0.69 0.869637
Target:  5'- gCGGcCGC-CGCGGCGGuGACGUCCUGu -3'
miRNA:   3'- aGUC-GUGaGCGUCGUC-UUGUAGGGCu -5'
10856 5' -54.3 NC_002794.1 + 45745 0.69 0.87693
Target:  5'- gUAGCGCagcgCGCGGCGGAuCAaCCCGc -3'
miRNA:   3'- aGUCGUGa---GCGUCGUCUuGUaGGGCu -5'
10856 5' -54.3 NC_002794.1 + 68839 0.69 0.87693
Target:  5'- cCGGCGCUCGCGGUccccGACGacCCCGGa -3'
miRNA:   3'- aGUCGUGAGCGUCGuc--UUGUa-GGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.