miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 5' -54.3 NC_002794.1 + 33933 0.66 0.96207
Target:  5'- aUCAuGCGCUUcCuGCuGAACAUCuCCGAg -3'
miRNA:   3'- -AGU-CGUGAGcGuCGuCUUGUAG-GGCU- -5'
10856 5' -54.3 NC_002794.1 + 184610 0.66 0.958501
Target:  5'- aUCGGCAacggC-CAGCGGcAGCGUCCaCGAu -3'
miRNA:   3'- -AGUCGUga--GcGUCGUC-UUGUAGG-GCU- -5'
10856 5' -54.3 NC_002794.1 + 130022 0.66 0.958501
Target:  5'- gUCGGC-CUCGC-GCgaGGAGCGUCCg-- -3'
miRNA:   3'- -AGUCGuGAGCGuCG--UCUUGUAGGgcu -5'
10856 5' -54.3 NC_002794.1 + 126612 0.66 0.958501
Target:  5'- cCGGCGCcgacgUCGCGGCGuGAGCGcgaccgggcgCCCGGa -3'
miRNA:   3'- aGUCGUG-----AGCGUCGU-CUUGUa---------GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 11716 0.66 0.958501
Target:  5'- gUCGGcCACUUGCAGCuguGGcAGCAUCaCGGa -3'
miRNA:   3'- -AGUC-GUGAGCGUCG---UC-UUGUAGgGCU- -5'
10856 5' -54.3 NC_002794.1 + 93791 0.66 0.958501
Target:  5'- gCGGCGCUCGagucccacgaCAGCAGcuCGacCCCGAg -3'
miRNA:   3'- aGUCGUGAGC----------GUCGUCuuGUa-GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 56151 0.67 0.954709
Target:  5'- aCGGCguGC-CGCAGCGGcAGCGgcCCCGGu -3'
miRNA:   3'- aGUCG--UGaGCGUCGUC-UUGUa-GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 126309 0.67 0.954709
Target:  5'- -uGGCGg-UGCAGCGGAGCGUgaCCCGc -3'
miRNA:   3'- agUCGUgaGCGUCGUCUUGUA--GGGCu -5'
10856 5' -54.3 NC_002794.1 + 69412 0.67 0.954709
Target:  5'- -aGGCGCcgagcCGCgacaGGCAGAGCGUcugCCCGAa -3'
miRNA:   3'- agUCGUGa----GCG----UCGUCUUGUA---GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 44123 0.67 0.954709
Target:  5'- aUCAGC--UCGCGGCAGugUAgggCCCGc -3'
miRNA:   3'- -AGUCGugAGCGUCGUCuuGUa--GGGCu -5'
10856 5' -54.3 NC_002794.1 + 34755 0.67 0.950689
Target:  5'- aCGGCGCggugggaCGCGGCAcGGCcgCCCGc -3'
miRNA:   3'- aGUCGUGa------GCGUCGUcUUGuaGGGCu -5'
10856 5' -54.3 NC_002794.1 + 70478 0.67 0.950689
Target:  5'- cCAGCACccgaugUCGgGGCAGGGCga-CCGAc -3'
miRNA:   3'- aGUCGUG------AGCgUCGUCUUGuagGGCU- -5'
10856 5' -54.3 NC_002794.1 + 14907 0.67 0.950689
Target:  5'- --cGCGCUCGaucgAGCGGGcucGCGgUCCCGAc -3'
miRNA:   3'- aguCGUGAGCg---UCGUCU---UGU-AGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 189905 0.67 0.950689
Target:  5'- gUCAGCGC-CGCcGCGcGACcgCCCGc -3'
miRNA:   3'- -AGUCGUGaGCGuCGUcUUGuaGGGCu -5'
10856 5' -54.3 NC_002794.1 + 136555 0.67 0.950274
Target:  5'- -gGGUACUCGUcucGCAGGugcucggGCGUCUCGAu -3'
miRNA:   3'- agUCGUGAGCGu--CGUCU-------UGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 183345 0.67 0.946437
Target:  5'- uUCAGCACguacagCGCGcCGGAccccAgGUCCCGGc -3'
miRNA:   3'- -AGUCGUGa-----GCGUcGUCU----UgUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 52180 0.67 0.946437
Target:  5'- --uGCGCaUCGCcugcgccaucaAGCAGAACAUCCUc- -3'
miRNA:   3'- aguCGUG-AGCG-----------UCGUCUUGUAGGGcu -5'
10856 5' -54.3 NC_002794.1 + 181619 0.67 0.946437
Target:  5'- --cGCAuCUCGCAcguGUAGGGCGgagCCCGGg -3'
miRNA:   3'- aguCGU-GAGCGU---CGUCUUGUa--GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 192859 0.67 0.941951
Target:  5'- cCAGCACgaaccaGCGGCAGcACAgCCgCGAc -3'
miRNA:   3'- aGUCGUGag----CGUCGUCuUGUaGG-GCU- -5'
10856 5' -54.3 NC_002794.1 + 50673 0.67 0.941951
Target:  5'- gCGGCGCUCGCcGC-GAAUcgaucgAUCUCGAu -3'
miRNA:   3'- aGUCGUGAGCGuCGuCUUG------UAGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.