miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 5' -54.3 NC_002794.1 + 13717 0.67 0.941951
Target:  5'- -gGGCGCUCGaccguGCGGAcccACAcgcUCCCGGc -3'
miRNA:   3'- agUCGUGAGCgu---CGUCU---UGU---AGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 50673 0.67 0.941951
Target:  5'- gCGGCGCUCGCcGC-GAAUcgaucgAUCUCGAu -3'
miRNA:   3'- aGUCGUGAGCGuCGuCUUG------UAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 192859 0.67 0.941951
Target:  5'- cCAGCACgaaccaGCGGCAGcACAgCCgCGAc -3'
miRNA:   3'- aGUCGUGag----CGUCGUCuUGUaGG-GCU- -5'
10856 5' -54.3 NC_002794.1 + 161562 0.67 0.941951
Target:  5'- aUAGCuauaUCGCGGCGGAGCcgucgGUCUCGu -3'
miRNA:   3'- aGUCGug--AGCGUCGUCUUG-----UAGGGCu -5'
10856 5' -54.3 NC_002794.1 + 14667 0.67 0.937228
Target:  5'- gUCGGUccgACUCGCGGCGGcggucGCGcugcUCCUGAc -3'
miRNA:   3'- -AGUCG---UGAGCGUCGUCu----UGU----AGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 194313 0.67 0.937228
Target:  5'- cCAGCGCcugcCGCAGCGGAucGCG-CCaCGGg -3'
miRNA:   3'- aGUCGUGa---GCGUCGUCU--UGUaGG-GCU- -5'
10856 5' -54.3 NC_002794.1 + 194547 0.67 0.937228
Target:  5'- cCAGCACgccCGC-GCGGAACAggugaCCCa- -3'
miRNA:   3'- aGUCGUGa--GCGuCGUCUUGUa----GGGcu -5'
10856 5' -54.3 NC_002794.1 + 119602 0.67 0.936742
Target:  5'- gCAGuCGCUC-CAGCgccucgaGGAACGUCUCGGc -3'
miRNA:   3'- aGUC-GUGAGcGUCG-------UCUUGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 190360 0.67 0.932266
Target:  5'- gUCGGcCGCgcggCGCAGCGGGuGC-UCCCGc -3'
miRNA:   3'- -AGUC-GUGa---GCGUCGUCU-UGuAGGGCu -5'
10856 5' -54.3 NC_002794.1 + 101515 0.67 0.932266
Target:  5'- gCGGCACaCGcCGGCGGGgugcccggcgccACGUUCCGAa -3'
miRNA:   3'- aGUCGUGaGC-GUCGUCU------------UGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 194784 0.68 0.927065
Target:  5'- cCGGCACgcgCGCAGCGGc---UCCCa- -3'
miRNA:   3'- aGUCGUGa--GCGUCGUCuuguAGGGcu -5'
10856 5' -54.3 NC_002794.1 + 44346 0.68 0.922178
Target:  5'- aCGGCGCcggcgagaccgagagCGCGGCGGGcgcgACGUCCgCGAc -3'
miRNA:   3'- aGUCGUGa--------------GCGUCGUCU----UGUAGG-GCU- -5'
10856 5' -54.3 NC_002794.1 + 41897 0.68 0.921623
Target:  5'- gUAGCGCUC-CAGCAGcGCG-CCaCGAg -3'
miRNA:   3'- aGUCGUGAGcGUCGUCuUGUaGG-GCU- -5'
10856 5' -54.3 NC_002794.1 + 116080 0.68 0.921623
Target:  5'- -gAGCGCUcggCGCGGCGGu-CGUCgCCGGg -3'
miRNA:   3'- agUCGUGA---GCGUCGUCuuGUAG-GGCU- -5'
10856 5' -54.3 NC_002794.1 + 138486 0.68 0.921623
Target:  5'- gUCGGCGgUCcCGGCGGggUucaugucgccgGUCCCGGu -3'
miRNA:   3'- -AGUCGUgAGcGUCGUCuuG-----------UAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 194831 0.68 0.921623
Target:  5'- --cGCGCUCGCGGCccGGCGUCuCCa- -3'
miRNA:   3'- aguCGUGAGCGUCGucUUGUAG-GGcu -5'
10856 5' -54.3 NC_002794.1 + 190964 0.68 0.910024
Target:  5'- cCAGCGcCUCgggGCAGCAGAGCAggcagCgCGGc -3'
miRNA:   3'- aGUCGU-GAG---CGUCGUCUUGUa----GgGCU- -5'
10856 5' -54.3 NC_002794.1 + 116707 0.68 0.903868
Target:  5'- cCAGCAC-CGC-GUcGAGCGUCUCGGu -3'
miRNA:   3'- aGUCGUGaGCGuCGuCUUGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 152568 0.68 0.903239
Target:  5'- gCGGCGCUucaccgcCGCGGCGGccgccACGUCCCu- -3'
miRNA:   3'- aGUCGUGA-------GCGUCGUCu----UGUAGGGcu -5'
10856 5' -54.3 NC_002794.1 + 66962 0.69 0.890855
Target:  5'- cCGGCgagucGCUCGcCGGgGGAGCGUCgCGAg -3'
miRNA:   3'- aGUCG-----UGAGC-GUCgUCUUGUAGgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.