miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 5' -54.3 NC_002794.1 + 11716 0.66 0.958501
Target:  5'- gUCGGcCACUUGCAGCuguGGcAGCAUCaCGGa -3'
miRNA:   3'- -AGUC-GUGAGCGUCG---UC-UUGUAGgGCU- -5'
10856 5' -54.3 NC_002794.1 + 13717 0.67 0.941951
Target:  5'- -gGGCGCUCGaccguGCGGAcccACAcgcUCCCGGc -3'
miRNA:   3'- agUCGUGAGCgu---CGUCU---UGU---AGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 14667 0.67 0.937228
Target:  5'- gUCGGUccgACUCGCGGCGGcggucGCGcugcUCCUGAc -3'
miRNA:   3'- -AGUCG---UGAGCGUCGUCu----UGU----AGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 14907 0.67 0.950689
Target:  5'- --cGCGCUCGaucgAGCGGGcucGCGgUCCCGAc -3'
miRNA:   3'- aguCGUGAGCg---UCGUCU---UGU-AGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 31116 0.66 0.96542
Target:  5'- -aGGUACauggCGgAGUAGAGCAgCCCGGa -3'
miRNA:   3'- agUCGUGa---GCgUCGUCUUGUaGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 31886 0.72 0.748243
Target:  5'- aCAGUACUCGacCAGCGGcGCGUCgCUGAu -3'
miRNA:   3'- aGUCGUGAGC--GUCGUCuUGUAG-GGCU- -5'
10856 5' -54.3 NC_002794.1 + 33933 0.66 0.96207
Target:  5'- aUCAuGCGCUUcCuGCuGAACAUCuCCGAg -3'
miRNA:   3'- -AGU-CGUGAGcGuCGuCUUGUAG-GGCU- -5'
10856 5' -54.3 NC_002794.1 + 34396 0.67 0.941951
Target:  5'- aCAGCuucuuCUCGCAGU---ACGUgCCCGAc -3'
miRNA:   3'- aGUCGu----GAGCGUCGucuUGUA-GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 34755 0.67 0.950689
Target:  5'- aCGGCGCggugggaCGCGGCAcGGCcgCCCGc -3'
miRNA:   3'- aGUCGUGa------GCGUCGUcUUGuaGGGCu -5'
10856 5' -54.3 NC_002794.1 + 36332 0.66 0.96207
Target:  5'- aCGGCg--CGCAGUcGAGCAaCCCGGc -3'
miRNA:   3'- aGUCGugaGCGUCGuCUUGUaGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 36724 0.73 0.698777
Target:  5'- -uGGCGCUCGCGcagcccguucacGUAGAAC-UCCCGGu -3'
miRNA:   3'- agUCGUGAGCGU------------CGUCUUGuAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 36875 0.66 0.96207
Target:  5'- gCAGcCGCgccagguagCGCGuGCAGAGCGUCCaGAg -3'
miRNA:   3'- aGUC-GUGa--------GCGU-CGUCUUGUAGGgCU- -5'
10856 5' -54.3 NC_002794.1 + 37504 0.69 0.862129
Target:  5'- gCAcGCGCguguggucgCGCAGCAccACGUCCCGGc -3'
miRNA:   3'- aGU-CGUGa--------GCGUCGUcuUGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 40867 1.09 0.004676
Target:  5'- uUCAGCACUCGCAGCAGAACAUCCCGAu -3'
miRNA:   3'- -AGUCGUGAGCGUCGUCUUGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 41897 0.68 0.921623
Target:  5'- gUAGCGCUC-CAGCAGcGCG-CCaCGAg -3'
miRNA:   3'- aGUCGUGAGcGUCGUCuUGUaGG-GCU- -5'
10856 5' -54.3 NC_002794.1 + 44123 0.67 0.954709
Target:  5'- aUCAGC--UCGCGGCAGugUAgggCCCGc -3'
miRNA:   3'- -AGUCGugAGCGUCGUCuuGUa--GGGCu -5'
10856 5' -54.3 NC_002794.1 + 44346 0.68 0.922178
Target:  5'- aCGGCGCcggcgagaccgagagCGCGGCGGGcgcgACGUCCgCGAc -3'
miRNA:   3'- aGUCGUGa--------------GCGUCGUCU----UGUAGG-GCU- -5'
10856 5' -54.3 NC_002794.1 + 45745 0.69 0.87693
Target:  5'- gUAGCGCagcgCGCGGCGGAuCAaCCCGc -3'
miRNA:   3'- aGUCGUGa---GCGUCGUCUuGUaGGGCu -5'
10856 5' -54.3 NC_002794.1 + 46663 0.72 0.728699
Target:  5'- aCAGCGCUCGCAGUcgcacaAGAucGCcgCCCu- -3'
miRNA:   3'- aGUCGUGAGCGUCG------UCU--UGuaGGGcu -5'
10856 5' -54.3 NC_002794.1 + 48246 0.66 0.971484
Target:  5'- uUCGGC---CGCAGCAGGAUcagCCCGc -3'
miRNA:   3'- -AGUCGugaGCGUCGUCUUGua-GGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.