miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 5' -54.3 NC_002794.1 + 49067 0.66 0.968556
Target:  5'- gCAGCacgACUCGCGGUaccAGAagACGUaCCCGu -3'
miRNA:   3'- aGUCG---UGAGCGUCG---UCU--UGUA-GGGCu -5'
10856 5' -54.3 NC_002794.1 + 50673 0.67 0.941951
Target:  5'- gCGGCGCUCGCcGC-GAAUcgaucgAUCUCGAu -3'
miRNA:   3'- aGUCGUGAGCGuCGuCUUG------UAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 52180 0.67 0.946437
Target:  5'- --uGCGCaUCGCcugcgccaucaAGCAGAACAUCCUc- -3'
miRNA:   3'- aguCGUG-AGCG-----------UCGUCUUGUAGGGcu -5'
10856 5' -54.3 NC_002794.1 + 54286 0.72 0.767379
Target:  5'- --uGCAgaCGCAGCAGGGCggCCCGc -3'
miRNA:   3'- aguCGUgaGCGUCGUCUUGuaGGGCu -5'
10856 5' -54.3 NC_002794.1 + 55306 0.66 0.96542
Target:  5'- gCGGCG-UCGCGGCGGGcgcggGCGgcUUCCGAg -3'
miRNA:   3'- aGUCGUgAGCGUCGUCU-----UGU--AGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 56151 0.67 0.954709
Target:  5'- aCGGCguGC-CGCAGCGGcAGCGgcCCCGGu -3'
miRNA:   3'- aGUCG--UGaGCGUCGUC-UUGUa-GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 58058 0.66 0.965094
Target:  5'- gUCGGCggccccgGCg-GCGGCGGGACGggcggCCCGGc -3'
miRNA:   3'- -AGUCG-------UGagCGUCGUCUUGUa----GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 66962 0.69 0.890855
Target:  5'- cCGGCgagucGCUCGcCGGgGGAGCGUCgCGAg -3'
miRNA:   3'- aGUCG-----UGAGC-GUCgUCUUGUAGgGCU- -5'
10856 5' -54.3 NC_002794.1 + 68839 0.69 0.87693
Target:  5'- cCGGCGCUCGCGGUccccGACGacCCCGGa -3'
miRNA:   3'- aGUCGUGAGCGUCGuc--UUGUa-GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 69412 0.67 0.954709
Target:  5'- -aGGCGCcgagcCGCgacaGGCAGAGCGUcugCCCGAa -3'
miRNA:   3'- agUCGUGa----GCG----UCGUCUUGUA---GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 70478 0.67 0.950689
Target:  5'- cCAGCACccgaugUCGgGGCAGGGCga-CCGAc -3'
miRNA:   3'- aGUCGUG------AGCgUCGUCUUGuagGGCU- -5'
10856 5' -54.3 NC_002794.1 + 70672 0.69 0.869637
Target:  5'- gCGGcCGC-CGCGGCGGuGACGUCCUGu -3'
miRNA:   3'- aGUC-GUGaGCGUCGUC-UUGUAGGGCu -5'
10856 5' -54.3 NC_002794.1 + 77463 0.75 0.566239
Target:  5'- uUCAGCA--CGCAGCGGAACcugcuguuUCCCGGg -3'
miRNA:   3'- -AGUCGUgaGCGUCGUCUUGu-------AGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 82070 0.66 0.968556
Target:  5'- cUCGGC-CUCGcCGGCccucucGGGCAcCCCGAc -3'
miRNA:   3'- -AGUCGuGAGC-GUCGu-----CUUGUaGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 85873 0.66 0.971484
Target:  5'- -aAGCguGCUUGguGCAGAcugaACGcgCCCGAa -3'
miRNA:   3'- agUCG--UGAGCguCGUCU----UGUa-GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 89542 0.69 0.879786
Target:  5'- gCAGCAgaCGCGacggaggagcgucguGCcGAGCGUCCCGGu -3'
miRNA:   3'- aGUCGUgaGCGU---------------CGuCUUGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 90462 0.7 0.821602
Target:  5'- uUCGGCGaggccgcgCGCGGCGGGGCcgccGUCCCGc -3'
miRNA:   3'- -AGUCGUga------GCGUCGUCUUG----UAGGGCu -5'
10856 5' -54.3 NC_002794.1 + 90976 0.66 0.968556
Target:  5'- uUCGGCGuggcCUCGUaccgggccgaGGCGGAGCGggCCGAc -3'
miRNA:   3'- -AGUCGU----GAGCG----------UCGUCUUGUagGGCU- -5'
10856 5' -54.3 NC_002794.1 + 92315 0.66 0.971484
Target:  5'- -gGGCGCggGCGGCGGGGg--CCCGGg -3'
miRNA:   3'- agUCGUGagCGUCGUCUUguaGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 93791 0.66 0.958501
Target:  5'- gCGGCGCUCGagucccacgaCAGCAGcuCGacCCCGAg -3'
miRNA:   3'- aGUCGUGAGC----------GUCGUCuuGUa-GGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.