miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10856 5' -54.3 NC_002794.1 + 194831 0.68 0.921623
Target:  5'- --cGCGCUCGCGGCccGGCGUCuCCa- -3'
miRNA:   3'- aguCGUGAGCGUCGucUUGUAG-GGcu -5'
10856 5' -54.3 NC_002794.1 + 194784 0.68 0.927065
Target:  5'- cCGGCACgcgCGCAGCGGc---UCCCa- -3'
miRNA:   3'- aGUCGUGa--GCGUCGUCuuguAGGGcu -5'
10856 5' -54.3 NC_002794.1 + 194547 0.67 0.937228
Target:  5'- cCAGCACgccCGC-GCGGAACAggugaCCCa- -3'
miRNA:   3'- aGUCGUGa--GCGuCGUCUUGUa----GGGcu -5'
10856 5' -54.3 NC_002794.1 + 194313 0.67 0.937228
Target:  5'- cCAGCGCcugcCGCAGCGGAucGCG-CCaCGGg -3'
miRNA:   3'- aGUCGUGa---GCGUCGUCU--UGUaGG-GCU- -5'
10856 5' -54.3 NC_002794.1 + 192859 0.67 0.941951
Target:  5'- cCAGCACgaaccaGCGGCAGcACAgCCgCGAc -3'
miRNA:   3'- aGUCGUGag----CGUCGUCuUGUaGG-GCU- -5'
10856 5' -54.3 NC_002794.1 + 192150 0.71 0.812948
Target:  5'- cCGGCGCggUCGCGGCGGAGCcugcgguagGUCCggCGAa -3'
miRNA:   3'- aGUCGUG--AGCGUCGUCUUG---------UAGG--GCU- -5'
10856 5' -54.3 NC_002794.1 + 190964 0.68 0.910024
Target:  5'- cCAGCGcCUCgggGCAGCAGAGCAggcagCgCGGc -3'
miRNA:   3'- aGUCGU-GAG---CGUCGUCUUGUa----GgGCU- -5'
10856 5' -54.3 NC_002794.1 + 190736 0.66 0.972599
Target:  5'- gCAGCGCcCGCcgccgucucgacgggGGCGGcggccgcGCGUCCCGGu -3'
miRNA:   3'- aGUCGUGaGCG---------------UCGUCu------UGUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 190360 0.67 0.932266
Target:  5'- gUCGGcCGCgcggCGCAGCGGGuGC-UCCCGc -3'
miRNA:   3'- -AGUC-GUGa---GCGUCGUCU-UGuAGGGCu -5'
10856 5' -54.3 NC_002794.1 + 189905 0.67 0.950689
Target:  5'- gUCAGCGC-CGCcGCGcGACcgCCCGc -3'
miRNA:   3'- -AGUCGUGaGCGuCGUcUUGuaGGGCu -5'
10856 5' -54.3 NC_002794.1 + 184906 0.69 0.884004
Target:  5'- -gGGCACUCGC-GCGgGAACAUCggcagCCGGc -3'
miRNA:   3'- agUCGUGAGCGuCGU-CUUGUAG-----GGCU- -5'
10856 5' -54.3 NC_002794.1 + 184610 0.66 0.958501
Target:  5'- aUCGGCAacggC-CAGCGGcAGCGUCCaCGAu -3'
miRNA:   3'- -AGUCGUga--GcGUCGUC-UUGUAGG-GCU- -5'
10856 5' -54.3 NC_002794.1 + 184366 0.72 0.738518
Target:  5'- gCGGCGCUCccaGCAGCGGAGgCAgucgaagacCCCGAa -3'
miRNA:   3'- aGUCGUGAG---CGUCGUCUU-GUa--------GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 183345 0.67 0.946437
Target:  5'- uUCAGCACguacagCGCGcCGGAccccAgGUCCCGGc -3'
miRNA:   3'- -AGUCGUGa-----GCGUcGUCU----UgUAGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 181619 0.67 0.946437
Target:  5'- --cGCAuCUCGCAcguGUAGGGCGgagCCCGGg -3'
miRNA:   3'- aguCGU-GAGCGU---CGUCUUGUa--GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 161562 0.67 0.941951
Target:  5'- aUAGCuauaUCGCGGCGGAGCcgucgGUCUCGu -3'
miRNA:   3'- aGUCGug--AGCGUCGUCUUG-----UAGGGCu -5'
10856 5' -54.3 NC_002794.1 + 158114 0.66 0.971484
Target:  5'- --cGCGC-CGUAGCGGGAgA-CCCGGu -3'
miRNA:   3'- aguCGUGaGCGUCGUCUUgUaGGGCU- -5'
10856 5' -54.3 NC_002794.1 + 152568 0.68 0.903239
Target:  5'- gCGGCGCUucaccgcCGCGGCGGccgccACGUCCCu- -3'
miRNA:   3'- aGUCGUGA-------GCGUCGUCu----UGUAGGGcu -5'
10856 5' -54.3 NC_002794.1 + 145332 0.69 0.869637
Target:  5'- gCGGCGCUCG-GGCccGAGCGggCCCGAg -3'
miRNA:   3'- aGUCGUGAGCgUCGu-CUUGUa-GGGCU- -5'
10856 5' -54.3 NC_002794.1 + 138913 0.66 0.96207
Target:  5'- -aGGUGCUgacCGCGGCGGAugGUCugCCGGu -3'
miRNA:   3'- agUCGUGA---GCGUCGUCUugUAG--GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.