Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10856 | 5' | -54.3 | NC_002794.1 | + | 40867 | 1.09 | 0.004676 |
Target: 5'- uUCAGCACUCGCAGCAGAACAUCCCGAu -3' miRNA: 3'- -AGUCGUGAGCGUCGUCUUGUAGGGCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 55306 | 0.66 | 0.96542 |
Target: 5'- gCGGCG-UCGCGGCGGGcgcggGCGgcUUCCGAg -3' miRNA: 3'- aGUCGUgAGCGUCGUCU-----UGU--AGGGCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 95030 | 0.66 | 0.96542 |
Target: 5'- gCGGCAuCUCGCcGguGGcgGCG-CCCGAg -3' miRNA: 3'- aGUCGU-GAGCGuCguCU--UGUaGGGCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 117752 | 0.66 | 0.96542 |
Target: 5'- gUCcGCGCguggugCGCAGCAGGuCGUCCa-- -3' miRNA: 3'- -AGuCGUGa-----GCGUCGUCUuGUAGGgcu -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 31116 | 0.66 | 0.96542 |
Target: 5'- -aGGUACauggCGgAGUAGAGCAgCCCGGa -3' miRNA: 3'- agUCGUGa---GCgUCGUCUUGUaGGGCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 33933 | 0.66 | 0.96207 |
Target: 5'- aUCAuGCGCUUcCuGCuGAACAUCuCCGAg -3' miRNA: 3'- -AGU-CGUGAGcGuCGuCUUGUAG-GGCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 58058 | 0.66 | 0.965094 |
Target: 5'- gUCGGCggccccgGCg-GCGGCGGGACGggcggCCCGGc -3' miRNA: 3'- -AGUCG-------UGagCGUCGUCUUGUa----GGGCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 184610 | 0.66 | 0.958501 |
Target: 5'- aUCGGCAacggC-CAGCGGcAGCGUCCaCGAu -3' miRNA: 3'- -AGUCGUga--GcGUCGUC-UUGUAGG-GCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 36875 | 0.66 | 0.96207 |
Target: 5'- gCAGcCGCgccagguagCGCGuGCAGAGCGUCCaGAg -3' miRNA: 3'- aGUC-GUGa--------GCGU-CGUCUUGUAGGgCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 123859 | 0.66 | 0.96542 |
Target: 5'- gUCAGCcacguGCUCGCcgAGCGGGuccagcugcuGCGUUCCGc -3' miRNA: 3'- -AGUCG-----UGAGCG--UCGUCU----------UGUAGGGCu -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 49067 | 0.66 | 0.968556 |
Target: 5'- gCAGCacgACUCGCGGUaccAGAagACGUaCCCGu -3' miRNA: 3'- aGUCG---UGAGCGUCG---UCU--UGUA-GGGCu -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 114016 | 0.66 | 0.968556 |
Target: 5'- -gAGCgACUCGUacaGGCGGGGCAgcggccgCCCGu -3' miRNA: 3'- agUCG-UGAGCG---UCGUCUUGUa------GGGCu -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 92315 | 0.66 | 0.971484 |
Target: 5'- -gGGCGCggGCGGCGGGGg--CCCGGg -3' miRNA: 3'- agUCGUGagCGUCGUCUUguaGGGCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 158114 | 0.66 | 0.971484 |
Target: 5'- --cGCGC-CGUAGCGGGAgA-CCCGGu -3' miRNA: 3'- aguCGUGaGCGUCGUCUUgUaGGGCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 93854 | 0.66 | 0.971484 |
Target: 5'- aCGGcCGCg-GCGGC-GAGCcgCCCGAg -3' miRNA: 3'- aGUC-GUGagCGUCGuCUUGuaGGGCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 48246 | 0.66 | 0.971484 |
Target: 5'- uUCGGC---CGCAGCAGGAUcagCCCGc -3' miRNA: 3'- -AGUCGugaGCGUCGUCUUGua-GGGCu -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 85873 | 0.66 | 0.971484 |
Target: 5'- -aAGCguGCUUGguGCAGAcugaACGcgCCCGAa -3' miRNA: 3'- agUCG--UGAGCguCGUCU----UGUa-GGGCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 90976 | 0.66 | 0.968556 |
Target: 5'- uUCGGCGuggcCUCGUaccgggccgaGGCGGAGCGggCCGAc -3' miRNA: 3'- -AGUCGU----GAGCG----------UCGUCUUGUagGGCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 117904 | 0.66 | 0.968556 |
Target: 5'- aCGGCcaGCUgGUGGaucgucuuGAACGUCCCGAg -3' miRNA: 3'- aGUCG--UGAgCGUCgu------CUUGUAGGGCU- -5' |
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10856 | 5' | -54.3 | NC_002794.1 | + | 82070 | 0.66 | 0.968556 |
Target: 5'- cUCGGC-CUCGcCGGCccucucGGGCAcCCCGAc -3' miRNA: 3'- -AGUCGuGAGC-GUCGu-----CUUGUaGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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