Results 1 - 20 of 22 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 14589 | 0.66 | 0.922547 |
Target: 5'- aGCgGGcCGUgGCGAGCGCgcCGGGCa- -3' miRNA: 3'- aUGgUCaGCA-UGCUCGCGa-GCUCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 32909 | 0.67 | 0.871645 |
Target: 5'- aACCAGUCGggcggcagcaggucgGCGggaAGCGCUCG-GCg- -3' miRNA: 3'- aUGGUCAGCa--------------UGC---UCGCGAGCuCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 34841 | 0.66 | 0.922547 |
Target: 5'- cGCCGGagcgggCGUcggaGCGGGCGCcgCGGGCg- -3' miRNA: 3'- aUGGUCa-----GCA----UGCUCGCGa-GCUCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 38404 | 0.67 | 0.891999 |
Target: 5'- -cCCGGUCacccgGCGAGCGCUCGccgacuccauGGCg- -3' miRNA: 3'- auGGUCAGca---UGCUCGCGAGC----------UCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 39251 | 1.03 | 0.007778 |
Target: 5'- gUACCAGUCGUACGAGCGCUCGAGCUUc -3' miRNA: 3'- -AUGGUCAGCAUGCUCGCGAGCUCGAA- -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 60952 | 0.66 | 0.922547 |
Target: 5'- cGCCuGcUCG-ACGAGCGC-CGGGCc- -3' miRNA: 3'- aUGGuC-AGCaUGCUCGCGaGCUCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 61878 | 0.71 | 0.69057 |
Target: 5'- cGCC-GUCGUcggcgccgcgcgGCGAGCGCggCGAGCg- -3' miRNA: 3'- aUGGuCAGCA------------UGCUCGCGa-GCUCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 90831 | 0.69 | 0.814496 |
Target: 5'- cAUCAGUCgGUACGAGgGCggCGuGCUg -3' miRNA: 3'- aUGGUCAG-CAUGCUCgCGa-GCuCGAa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 96553 | 0.66 | 0.911035 |
Target: 5'- aACCGGUCG-ACGAGgaGCggGAGCg- -3' miRNA: 3'- aUGGUCAGCaUGCUCg-CGagCUCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 99783 | 0.7 | 0.759605 |
Target: 5'- gUGCCGgcGUCGacUACGAGCGCgcgccgCGGGCg- -3' miRNA: 3'- -AUGGU--CAGC--AUGCUCGCGa-----GCUCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 101615 | 0.66 | 0.903044 |
Target: 5'- cGCCGGgcgggggugccguuUCGUccGCGAGCGUgggCGGGCg- -3' miRNA: 3'- aUGGUC--------------AGCA--UGCUCGCGa--GCUCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 112617 | 0.67 | 0.898577 |
Target: 5'- cACCugcgcGUCGUccACGGGCGgcuuCUCGAGCa- -3' miRNA: 3'- aUGGu----CAGCA--UGCUCGC----GAGCUCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 122684 | 0.71 | 0.69057 |
Target: 5'- gUGCCGGUCGcGCcAGCGC-CGGGCg- -3' miRNA: 3'- -AUGGUCAGCaUGcUCGCGaGCUCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 125762 | 0.7 | 0.737378 |
Target: 5'- gGCCGG-CGgcucgccacccggcUGCGAGCGCUCaaGAGCUg -3' miRNA: 3'- aUGGUCaGC--------------AUGCUCGCGAG--CUCGAa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 135690 | 0.69 | 0.796771 |
Target: 5'- ---gAGUCGUgACGgucuccagguAGCGCUCGAGCUg -3' miRNA: 3'- auggUCAGCA-UGC----------UCGCGAGCUCGAa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 145316 | 0.68 | 0.83982 |
Target: 5'- aACCGGcgCGcgGCGggcGGCGCUCGGGCc- -3' miRNA: 3'- aUGGUCa-GCa-UGC---UCGCGAGCUCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 146881 | 0.69 | 0.787681 |
Target: 5'- gGCgCGGUCGgcCGAugauuauaaaagGCGCUCGGGCg- -3' miRNA: 3'- aUG-GUCAGCauGCU------------CGCGAGCUCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 146927 | 0.66 | 0.933102 |
Target: 5'- gGCCGGaCGga-GAGCGCUCGgucuGGCg- -3' miRNA: 3'- aUGGUCaGCaugCUCGCGAGC----UCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 161101 | 0.66 | 0.91691 |
Target: 5'- cUACCAGUCgGUGCGcGUuaUCGAGUc- -3' miRNA: 3'- -AUGGUCAG-CAUGCuCGcgAGCUCGaa -5' |
|||||||
10857 | 3' | -55.9 | NC_002794.1 | + | 176863 | 0.67 | 0.898577 |
Target: 5'- gAUCAGUacggaGUGCGAGCGuCUCGAucauggGCUc -3' miRNA: 3'- aUGGUCAg----CAUGCUCGC-GAGCU------CGAa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home