miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10857 5' -59.3 NC_002794.1 + 100288 0.66 0.880245
Target:  5'- cCCGAGcuucggcuggugCCGCCUCCGCCgcuggcacgcgcGGCCGGc -3'
miRNA:   3'- -GGUUCua----------GGUGGGGGCGGa-----------CUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 186256 0.66 0.877555
Target:  5'- cCCAAcGUCgACCggaucaCCGCCUGGCgCGGcGg -3'
miRNA:   3'- -GGUUcUAGgUGGg-----GGCGGACUG-GCC-C- -5'
10857 5' -59.3 NC_002794.1 + 99233 0.66 0.877555
Target:  5'- aUAAGAgcggaCCGCcggaCCCCGCCgcggaggGGCuCGGGg -3'
miRNA:   3'- gGUUCUa----GGUG----GGGGCGGa------CUG-GCCC- -5'
10857 5' -59.3 NC_002794.1 + 57399 0.66 0.877555
Target:  5'- aCC-GGcUCCGgCgCCCGCgUGGCCGGc -3'
miRNA:   3'- -GGuUCuAGGUgG-GGGCGgACUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 83015 0.66 0.877555
Target:  5'- ---cGAUCUGCgCCCCGUCccgGcGCCGGGc -3'
miRNA:   3'- gguuCUAGGUG-GGGGCGGa--C-UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 121408 0.66 0.877555
Target:  5'- gCCGGGAccgCgACCgUCGCCggGACCGcGGc -3'
miRNA:   3'- -GGUUCUa--GgUGGgGGCGGa-CUGGC-CC- -5'
10857 5' -59.3 NC_002794.1 + 12889 0.66 0.870693
Target:  5'- gCC-GGA-CCACgaCCCGCUcGACUGGGc -3'
miRNA:   3'- -GGuUCUaGGUGg-GGGCGGaCUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 12167 0.66 0.870693
Target:  5'- gCCcGGAUcgucgCCGCCgacgCCGCCgcGGCCGGGc -3'
miRNA:   3'- -GGuUCUA-----GGUGGg---GGCGGa-CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 41848 0.66 0.870693
Target:  5'- ---cGAUCagcaGCCCcaggCCGCCgggcagGGCCGGGc -3'
miRNA:   3'- gguuCUAGg---UGGG----GGCGGa-----CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 75354 0.66 0.870693
Target:  5'- gCGAcGGUUCGCCaccgaCCCGCCgcGGCCGGcGg -3'
miRNA:   3'- gGUU-CUAGGUGG-----GGGCGGa-CUGGCC-C- -5'
10857 5' -59.3 NC_002794.1 + 143104 0.66 0.870693
Target:  5'- gCGuguUCCAgCCCCGCUcGGCCGuGGc -3'
miRNA:   3'- gGUucuAGGUgGGGGCGGaCUGGC-CC- -5'
10857 5' -59.3 NC_002794.1 + 25298 0.66 0.863639
Target:  5'- uCC-AGAUcCCACCCaucucgaGUCcGACCGGGc -3'
miRNA:   3'- -GGuUCUA-GGUGGGgg-----CGGaCUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 68126 0.66 0.863639
Target:  5'- cUCGAGAUCCugCUgauCCGCgaGACCcugcacaacacGGGc -3'
miRNA:   3'- -GGUUCUAGGugGG---GGCGgaCUGG-----------CCC- -5'
10857 5' -59.3 NC_002794.1 + 75268 0.66 0.863639
Target:  5'- aCCcGGcUCCACCgCCCaCCcGGCCGGc -3'
miRNA:   3'- -GGuUCuAGGUGG-GGGcGGaCUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 109512 0.66 0.863639
Target:  5'- ---uGGUCCGCCcggCCCGCgCUcguucggcgucgGGCCGGGc -3'
miRNA:   3'- gguuCUAGGUGG---GGGCG-GA------------CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 133920 0.66 0.863639
Target:  5'- aCGAGAcggcggCCGCgCCCGUCcaguugcggggUGACCGGa -3'
miRNA:   3'- gGUUCUa-----GGUGgGGGCGG-----------ACUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 99426 0.66 0.863639
Target:  5'- gCAGGGUCCggguuuguuggACCggaUCCGCC--GCCGGGg -3'
miRNA:   3'- gGUUCUAGG-----------UGG---GGGCGGacUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 121375 0.66 0.863639
Target:  5'- uCCGAGc-CgGCCgCCGCCggGACCGcGGc -3'
miRNA:   3'- -GGUUCuaGgUGGgGGCGGa-CUGGC-CC- -5'
10857 5' -59.3 NC_002794.1 + 183512 0.66 0.859317
Target:  5'- cCCGAGAcccaugucgcggccgUgCGCgCCCCGUCcGcCCGGGg -3'
miRNA:   3'- -GGUUCU---------------AgGUG-GGGGCGGaCuGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 46602 0.66 0.856399
Target:  5'- aCCu--GUCCGCCgCCGUCcGcGCCGGGc -3'
miRNA:   3'- -GGuucUAGGUGGgGGCGGaC-UGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.