Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10857 | 5' | -59.3 | NC_002794.1 | + | 46602 | 0.66 | 0.856399 |
Target: 5'- aCCu--GUCCGCCgCCGUCcGcGCCGGGc -3' miRNA: 3'- -GGuucUAGGUGGgGGCGGaC-UGGCCC- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 99426 | 0.66 | 0.863639 |
Target: 5'- gCAGGGUCCggguuuguuggACCggaUCCGCC--GCCGGGg -3' miRNA: 3'- gGUUCUAGG-----------UGG---GGGCGGacUGGCCC- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 133920 | 0.66 | 0.863639 |
Target: 5'- aCGAGAcggcggCCGCgCCCGUCcaguugcggggUGACCGGa -3' miRNA: 3'- gGUUCUa-----GGUGgGGGCGG-----------ACUGGCCc -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 109512 | 0.66 | 0.863639 |
Target: 5'- ---uGGUCCGCCcggCCCGCgCUcguucggcgucgGGCCGGGc -3' miRNA: 3'- gguuCUAGGUGG---GGGCG-GA------------CUGGCCC- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 75268 | 0.66 | 0.863639 |
Target: 5'- aCCcGGcUCCACCgCCCaCCcGGCCGGc -3' miRNA: 3'- -GGuUCuAGGUGG-GGGcGGaCUGGCCc -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 68126 | 0.66 | 0.863639 |
Target: 5'- cUCGAGAUCCugCUgauCCGCgaGACCcugcacaacacGGGc -3' miRNA: 3'- -GGUUCUAGGugGG---GGCGgaCUGG-----------CCC- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 25298 | 0.66 | 0.863639 |
Target: 5'- uCC-AGAUcCCACCCaucucgaGUCcGACCGGGc -3' miRNA: 3'- -GGuUCUA-GGUGGGgg-----CGGaCUGGCCC- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 183512 | 0.66 | 0.859317 |
Target: 5'- cCCGAGAcccaugucgcggccgUgCGCgCCCCGUCcGcCCGGGg -3' miRNA: 3'- -GGUUCU---------------AgGUG-GGGGCGGaCuGGCCC- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 126115 | 0.66 | 0.856399 |
Target: 5'- cCUggGcgCCGCgCUCGUCUGcGCCGGu -3' miRNA: 3'- -GGuuCuaGGUGgGGGCGGAC-UGGCCc -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 121375 | 0.66 | 0.863639 |
Target: 5'- uCCGAGc-CgGCCgCCGCCggGACCGcGGc -3' miRNA: 3'- -GGUUCuaGgUGGgGGCGGa-CUGGC-CC- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 12889 | 0.66 | 0.870693 |
Target: 5'- gCC-GGA-CCACgaCCCGCUcGACUGGGc -3' miRNA: 3'- -GGuUCUaGGUGg-GGGCGGaCUGGCCC- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 12167 | 0.66 | 0.870693 |
Target: 5'- gCCcGGAUcgucgCCGCCgacgCCGCCgcGGCCGGGc -3' miRNA: 3'- -GGuUCUA-----GGUGGg---GGCGGa-CUGGCCC- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 186256 | 0.66 | 0.877555 |
Target: 5'- cCCAAcGUCgACCggaucaCCGCCUGGCgCGGcGg -3' miRNA: 3'- -GGUUcUAGgUGGg-----GGCGGACUG-GCC-C- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 99233 | 0.66 | 0.877555 |
Target: 5'- aUAAGAgcggaCCGCcggaCCCCGCCgcggaggGGCuCGGGg -3' miRNA: 3'- gGUUCUa----GGUG----GGGGCGGa------CUG-GCCC- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 57399 | 0.66 | 0.877555 |
Target: 5'- aCC-GGcUCCGgCgCCCGCgUGGCCGGc -3' miRNA: 3'- -GGuUCuAGGUgG-GGGCGgACUGGCCc -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 83015 | 0.66 | 0.877555 |
Target: 5'- ---cGAUCUGCgCCCCGUCccgGcGCCGGGc -3' miRNA: 3'- gguuCUAGGUG-GGGGCGGa--C-UGGCCC- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 121408 | 0.66 | 0.877555 |
Target: 5'- gCCGGGAccgCgACCgUCGCCggGACCGcGGc -3' miRNA: 3'- -GGUUCUa--GgUGGgGGCGGa-CUGGC-CC- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 143104 | 0.66 | 0.870693 |
Target: 5'- gCGuguUCCAgCCCCGCUcGGCCGuGGc -3' miRNA: 3'- gGUucuAGGUgGGGGCGGaCUGGC-CC- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 75354 | 0.66 | 0.870693 |
Target: 5'- gCGAcGGUUCGCCaccgaCCCGCCgcGGCCGGcGg -3' miRNA: 3'- gGUU-CUAGGUGG-----GGGCGGa-CUGGCC-C- -5' |
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10857 | 5' | -59.3 | NC_002794.1 | + | 41848 | 0.66 | 0.870693 |
Target: 5'- ---cGAUCagcaGCCCcaggCCGCCgggcagGGCCGGGc -3' miRNA: 3'- gguuCUAGg---UGGG----GGCGGa-----CUGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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