miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10857 5' -59.3 NC_002794.1 + 39285 1.12 0.001436
Target:  5'- aCCAAGAUCCACCCCCGCCUGACCGGGa -3'
miRNA:   3'- -GGUUCUAGGUGGGGGCGGACUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 45896 0.78 0.253207
Target:  5'- aCCGAGccCCGCCCgCCGCCgGcACCGGGc -3'
miRNA:   3'- -GGUUCuaGGUGGG-GGCGGaC-UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 72847 0.76 0.359031
Target:  5'- cCCGAGAUCCGCggcucuccgUCUCGCCUcgacuccucGGCCGGGu -3'
miRNA:   3'- -GGUUCUAGGUG---------GGGGCGGA---------CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 44273 0.75 0.389899
Target:  5'- gCCGGGGacggaggagUCCGCgCCCGCCgGGCCGGc -3'
miRNA:   3'- -GGUUCU---------AGGUGgGGGCGGaCUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 43494 0.74 0.44791
Target:  5'- --cGGAUCC-CCUCCGCCaGGCCGGu -3'
miRNA:   3'- gguUCUAGGuGGGGGCGGaCUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 8715 0.73 0.492144
Target:  5'- cCCcGGGUCCACaCCCC-CCaGACCGuGGa -3'
miRNA:   3'- -GGuUCUAGGUG-GGGGcGGaCUGGC-CC- -5'
10857 5' -59.3 NC_002794.1 + 86818 0.73 0.510398
Target:  5'- uCCAGGG-CCGCgaCCUCGCCggGAUCGGGu -3'
miRNA:   3'- -GGUUCUaGGUG--GGGGCGGa-CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 127476 0.73 0.510398
Target:  5'- gCCGcGA-CCACCgCCGCuCUGcGCCGGGa -3'
miRNA:   3'- -GGUuCUaGGUGGgGGCG-GAC-UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 62168 0.72 0.570495
Target:  5'- uUCGAGA-CCACCCCCGgcugcaagcucauccCCguccggcucGACCGGGa -3'
miRNA:   3'- -GGUUCUaGGUGGGGGC---------------GGa--------CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 73262 0.71 0.58582
Target:  5'- cCCGAcc-CCACCUCCGCC-GACCGcGGc -3'
miRNA:   3'- -GGUUcuaGGUGGGGGCGGaCUGGC-CC- -5'
10857 5' -59.3 NC_002794.1 + 58439 0.71 0.595439
Target:  5'- gCCGAGG-CCACgCUgCGCCUGGCCGc- -3'
miRNA:   3'- -GGUUCUaGGUG-GGgGCGGACUGGCcc -5'
10857 5' -59.3 NC_002794.1 + 56543 0.71 0.595439
Target:  5'- gCCAuccGGAgcgcucgccgCCGCCCCCGCCgccGACCGc- -3'
miRNA:   3'- -GGU---UCUa---------GGUGGGGGCGGa--CUGGCcc -5'
10857 5' -59.3 NC_002794.1 + 190655 0.71 0.605081
Target:  5'- gCAGGAUCacguCGCgCCCGCCgcgccGCCGGGu -3'
miRNA:   3'- gGUUCUAG----GUGgGGGCGGac---UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 2075 0.71 0.605081
Target:  5'- uCCGAGA-CgACCgCCgGCCUuauacggcGACCGGGg -3'
miRNA:   3'- -GGUUCUaGgUGG-GGgCGGA--------CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 34064 0.71 0.605081
Target:  5'- gCAcGAcCCGCCguuCCCGCCggcGGCCGGGc -3'
miRNA:   3'- gGUuCUaGGUGG---GGGCGGa--CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 39028 0.71 0.605081
Target:  5'- gCAAGAUCUACUUUCGCCggGACggCGGGc -3'
miRNA:   3'- gGUUCUAGGUGGGGGCGGa-CUG--GCCC- -5'
10857 5' -59.3 NC_002794.1 + 69793 0.71 0.614742
Target:  5'- aCGAGAgcgCCGCCgcguagCCCGCCgccgcGACCGGc -3'
miRNA:   3'- gGUUCUa--GGUGG------GGGCGGa----CUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 185978 0.71 0.614742
Target:  5'- uCCcGGGUCCGCCaCCGUCUccuccGCCGGGc -3'
miRNA:   3'- -GGuUCUAGGUGGgGGCGGAc----UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 7954 0.7 0.624415
Target:  5'- cCCGGGG-CCuauuCCCCCGCUUacuCCGGGc -3'
miRNA:   3'- -GGUUCUaGGu---GGGGGCGGAcu-GGCCC- -5'
10857 5' -59.3 NC_002794.1 + 101941 0.7 0.624415
Target:  5'- gCCAGGGcaUgCugCCCUGCCUGcCCGuGGc -3'
miRNA:   3'- -GGUUCU--AgGugGGGGCGGACuGGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.