miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10857 5' -59.3 NC_002794.1 + 150959 0.7 0.634092
Target:  5'- uUCGAGAUCUACgaCCUGCCcucGGCCGGu -3'
miRNA:   3'- -GGUUCUAGGUGg-GGGCGGa--CUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 2499 0.7 0.653436
Target:  5'- gCCGGGGUCCagACCCCCuCCcaucaGAUUGGGa -3'
miRNA:   3'- -GGUUCUAGG--UGGGGGcGGa----CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 195568 0.7 0.671758
Target:  5'- cCCGAG--CCGCCCcgaccgaCCGCCgGACCGGc -3'
miRNA:   3'- -GGUUCuaGGUGGG-------GGCGGaCUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 1615 0.69 0.68232
Target:  5'- uCCGAGG--CGCCCaCCgGCCUGAUaCGGGg -3'
miRNA:   3'- -GGUUCUagGUGGG-GG-CGGACUG-GCCC- -5'
10857 5' -59.3 NC_002794.1 + 59659 0.69 0.68232
Target:  5'- gCCAcggcgcugcAGAgCCGCCUgCGCCUGcacCCGGGc -3'
miRNA:   3'- -GGU---------UCUaGGUGGGgGCGGACu--GGCCC- -5'
10857 5' -59.3 NC_002794.1 + 1678 0.69 0.68232
Target:  5'- uCCGAGG--CGCCCaCCgGCCUGAUaCGGGg -3'
miRNA:   3'- -GGUUCUagGUGGG-GG-CGGACUG-GCCC- -5'
10857 5' -59.3 NC_002794.1 + 186072 0.69 0.691884
Target:  5'- gCCAccg-CCGCCgCCGCCUucGCCGGGc -3'
miRNA:   3'- -GGUucuaGGUGGgGGCGGAc-UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 148042 0.69 0.701404
Target:  5'- aCCAcuacgaacGGAUCgGCUCCgCGCuCUGggaGCCGGGa -3'
miRNA:   3'- -GGU--------UCUAGgUGGGG-GCG-GAC---UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 149228 0.69 0.701404
Target:  5'- gCGAGGcgCCGCCgCCGUC--GCCGGGg -3'
miRNA:   3'- gGUUCUa-GGUGGgGGCGGacUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 63564 0.69 0.701404
Target:  5'- gCCAAGAcgUCACCuUCCGCCc--CCGGGa -3'
miRNA:   3'- -GGUUCUa-GGUGG-GGGCGGacuGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 194360 0.69 0.710871
Target:  5'- gCCAGGAaCCGCUCCCGCgUGcCCa-- -3'
miRNA:   3'- -GGUUCUaGGUGGGGGCGgACuGGccc -5'
10857 5' -59.3 NC_002794.1 + 148815 0.69 0.710871
Target:  5'- gCgGAGAUCuggagaCugCCCCGC--GACCGGGa -3'
miRNA:   3'- -GgUUCUAG------GugGGGGCGgaCUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 82306 0.69 0.720279
Target:  5'- gCCGAGAucucgcUCCACCgcacaCCCGCCgUGACCu-- -3'
miRNA:   3'- -GGUUCU------AGGUGG-----GGGCGG-ACUGGccc -5'
10857 5' -59.3 NC_002794.1 + 62600 0.69 0.720279
Target:  5'- gCCAGGG-CCACCgCCGCCU--UCGGa -3'
miRNA:   3'- -GGUUCUaGGUGGgGGCGGAcuGGCCc -5'
10857 5' -59.3 NC_002794.1 + 34006 0.69 0.720279
Target:  5'- uCCAAGAccugacgccgUCCAUCaucgaccagagCCGCCUGcuGCCGGGc -3'
miRNA:   3'- -GGUUCU----------AGGUGGg----------GGCGGAC--UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 195199 0.69 0.720279
Target:  5'- gCCGucAGGUCCAgCCCCGCCa-GCUGcGGc -3'
miRNA:   3'- -GGU--UCUAGGUgGGGGCGGacUGGC-CC- -5'
10857 5' -59.3 NC_002794.1 + 51363 0.69 0.720279
Target:  5'- cCCGAGGcggCCG-CCCCGUCcGGCCGGc -3'
miRNA:   3'- -GGUUCUa--GGUgGGGGCGGaCUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 62962 0.69 0.720279
Target:  5'- cCCAAGA-CCACCgCCCGCUuccUGaucaccGCCGGc -3'
miRNA:   3'- -GGUUCUaGGUGG-GGGCGG---AC------UGGCCc -5'
10857 5' -59.3 NC_002794.1 + 52261 0.69 0.733334
Target:  5'- aCGAGAucgagcagcccuUCUACCUCCugggccgcgagaaacGCCUGGCCGuGGa -3'
miRNA:   3'- gGUUCU------------AGGUGGGGG---------------CGGACUGGC-CC- -5'
10857 5' -59.3 NC_002794.1 + 151892 0.68 0.738883
Target:  5'- cCCucGAUUCggcGCCCCagaGCCUGGCCGa- -3'
miRNA:   3'- -GGuuCUAGG---UGGGGg--CGGACUGGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.