miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10857 5' -59.3 NC_002794.1 + 47110 0.66 0.856399
Target:  5'- cUCAAGGagguggaguUCCGCUgCCGCCgacucuucGGCCGGa -3'
miRNA:   3'- -GGUUCU---------AGGUGGgGGCGGa-------CUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 101572 0.66 0.856399
Target:  5'- gCGGGAgugCCGgCCgCCGC--GGCCGGGg -3'
miRNA:   3'- gGUUCUa--GGUgGG-GGCGgaCUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 46602 0.66 0.856399
Target:  5'- aCCu--GUCCGCCgCCGUCcGcGCCGGGc -3'
miRNA:   3'- -GGuucUAGGUGGgGGCGGaC-UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 126115 0.66 0.856399
Target:  5'- cCUggGcgCCGCgCUCGUCUGcGCCGGu -3'
miRNA:   3'- -GGuuCuaGGUGgGGGCGGAC-UGGCCc -5'
10857 5' -59.3 NC_002794.1 + 8517 0.66 0.848978
Target:  5'- uUCAAGGccCCGCCCCUGCaCgaaGuCUGGGa -3'
miRNA:   3'- -GGUUCUa-GGUGGGGGCG-Ga--CuGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 19354 0.66 0.848978
Target:  5'- cCCucg--CCGCccgCCCCGCCcgGAUCGGGc -3'
miRNA:   3'- -GGuucuaGGUG---GGGGCGGa-CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 84319 0.66 0.848978
Target:  5'- aCCGGG--CCGCCCgagagCCGCCUcGACCgaacGGGa -3'
miRNA:   3'- -GGUUCuaGGUGGG-----GGCGGA-CUGG----CCC- -5'
10857 5' -59.3 NC_002794.1 + 44586 0.66 0.848978
Target:  5'- aCCGAG--CCACCgCCGCCUucUUGGGc -3'
miRNA:   3'- -GGUUCuaGGUGGgGGCGGAcuGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 110297 0.66 0.848226
Target:  5'- cCCGAGAgccgcggggacucUCCGCUCgCCGCCgcGACgccgcgCGGGg -3'
miRNA:   3'- -GGUUCU-------------AGGUGGG-GGCGGa-CUG------GCCC- -5'
10857 5' -59.3 NC_002794.1 + 191523 0.66 0.846717
Target:  5'- gCCGGGcGUCgGCCCgCGCCUcccgccgcagucggGuCCGGGu -3'
miRNA:   3'- -GGUUC-UAGgUGGGgGCGGA--------------CuGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 189542 0.66 0.84138
Target:  5'- cCCAGucGAUCCACCacauggcgguCCCGCUcggucGGCCGGc -3'
miRNA:   3'- -GGUU--CUAGGUGG----------GGGCGGa----CUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 154781 0.66 0.84138
Target:  5'- cCUGAGAUCCuuCUgCGacagaUUGACCGGGa -3'
miRNA:   3'- -GGUUCUAGGugGGgGCg----GACUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 178531 0.67 0.833613
Target:  5'- ---cGGUCCGCUagguCCCGCUgccGAUCGGGc -3'
miRNA:   3'- gguuCUAGGUGG----GGGCGGa--CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 18729 0.67 0.833613
Target:  5'- gCCGAcGAgCCGCCCCaaCGCCacgacGGCCGGcGg -3'
miRNA:   3'- -GGUU-CUaGGUGGGG--GCGGa----CUGGCC-C- -5'
10857 5' -59.3 NC_002794.1 + 101259 0.67 0.825682
Target:  5'- gCGGGGggCCGCCCCCGgC--GCCGGu -3'
miRNA:   3'- gGUUCUa-GGUGGGGGCgGacUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 91615 0.67 0.817593
Target:  5'- gCCGAGGgccacgccgaccUCCugCgCCGCCUGuCCGa- -3'
miRNA:   3'- -GGUUCU------------AGGugGgGGCGGACuGGCcc -5'
10857 5' -59.3 NC_002794.1 + 121781 0.67 0.817593
Target:  5'- gCCGccGAUCC-CCCCgGCCaccgcGACCGGc -3'
miRNA:   3'- -GGUu-CUAGGuGGGGgCGGa----CUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 99884 0.67 0.817593
Target:  5'- uCCAAGGagcugaUCCACCCgggcuaCCGCC--ACCGGa -3'
miRNA:   3'- -GGUUCU------AGGUGGG------GGCGGacUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 42257 0.67 0.817593
Target:  5'- uCCGAGcccgcUCCGCCCUCGCCccGCCGc- -3'
miRNA:   3'- -GGUUCu----AGGUGGGGGCGGacUGGCcc -5'
10857 5' -59.3 NC_002794.1 + 134618 0.67 0.809353
Target:  5'- gCCGAGuugaCCGCCaUCGCCUG-CCGGu -3'
miRNA:   3'- -GGUUCua--GGUGGgGGCGGACuGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.