miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10857 5' -59.3 NC_002794.1 + 44691 0.67 0.809353
Target:  5'- uCC-AGAcCCACCgCCGCCcGGCCGcGa -3'
miRNA:   3'- -GGuUCUaGGUGGgGGCGGaCUGGC-Cc -5'
10857 5' -59.3 NC_002794.1 + 35256 0.67 0.809353
Target:  5'- cUCAAGAUCUcgaACCUgCGgCUGAaacaCCGGGu -3'
miRNA:   3'- -GGUUCUAGG---UGGGgGCgGACU----GGCCC- -5'
10857 5' -59.3 NC_002794.1 + 134618 0.67 0.809353
Target:  5'- gCCGAGuugaCCGCCaUCGCCUG-CCGGu -3'
miRNA:   3'- -GGUUCua--GGUGGgGGCGGACuGGCCc -5'
10857 5' -59.3 NC_002794.1 + 192376 0.67 0.809353
Target:  5'- aCCGAGcgcgggcugaCCGCCaCCGCCgcGCCGGGg -3'
miRNA:   3'- -GGUUCua--------GGUGGgGGCGGacUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 86649 0.67 0.808521
Target:  5'- gCCGGGAcggaugcUCCGgCCCgaGCCcGACCGGu -3'
miRNA:   3'- -GGUUCU-------AGGUgGGGg-CGGaCUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 181529 0.67 0.80097
Target:  5'- ----cGUUCGCCCgCCGCCggcgGGCCGGc -3'
miRNA:   3'- gguucUAGGUGGG-GGCGGa---CUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 96348 0.67 0.80097
Target:  5'- -gAGGAUCUgg-UCCGCCUGGCCGaGGg -3'
miRNA:   3'- ggUUCUAGGuggGGGCGGACUGGC-CC- -5'
10857 5' -59.3 NC_002794.1 + 137126 0.67 0.792451
Target:  5'- cCCGAacugucGUCCGuCCgCCCGCCcGGCCGGc -3'
miRNA:   3'- -GGUUc-----UAGGU-GG-GGGCGGaCUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 16316 0.67 0.792451
Target:  5'- gCCGgcuGGAUCC-CCCugCC-CCUGGCCGGc -3'
miRNA:   3'- -GGU---UCUAGGuGGG--GGcGGACUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 81376 0.67 0.789869
Target:  5'- aCGGGAUCCGCCgCaaCGCCUcuggcuccggucccGGCuCGGGa -3'
miRNA:   3'- gGUUCUAGGUGGgG--GCGGA--------------CUG-GCCC- -5'
10857 5' -59.3 NC_002794.1 + 112237 0.68 0.775031
Target:  5'- uCCAGGG-CCGCCgcgaacgCCGCCggcggGACCGGc -3'
miRNA:   3'- -GGUUCUaGGUGGg------GGCGGa----CUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 144483 0.68 0.775031
Target:  5'- aCCc-GAUgUACCCgCCGCC-GAUCGGGc -3'
miRNA:   3'- -GGuuCUAgGUGGG-GGCGGaCUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 86289 0.68 0.765252
Target:  5'- gCCGGGAcggaugcUCCGgCCCgaGCCcGACCGGa -3'
miRNA:   3'- -GGUUCU-------AGGUgGGGg-CGGaCUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 86097 0.68 0.765252
Target:  5'- gCCGGGAcggaugcUCCGgCCCgaGCCcGACCGGa -3'
miRNA:   3'- -GGUUCU-------AGGUgGGGg-CGGaCUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 52600 0.68 0.765252
Target:  5'- gCCGAcGUCCGCCcgagacgCCCGCCcGACCGc- -3'
miRNA:   3'- -GGUUcUAGGUGG-------GGGCGGaCUGGCcc -5'
10857 5' -59.3 NC_002794.1 + 4108 0.68 0.757155
Target:  5'- cCCAGGAccccCCAcCCCCCGUUcGuucCCGGGg -3'
miRNA:   3'- -GGUUCUa---GGU-GGGGGCGGaCu--GGCCC- -5'
10857 5' -59.3 NC_002794.1 + 123906 0.68 0.75625
Target:  5'- cCCGAGcugCCGCCUCgCGCCgGAccugcccCCGGGc -3'
miRNA:   3'- -GGUUCua-GGUGGGG-GCGGaCU-------GGCCC- -5'
10857 5' -59.3 NC_002794.1 + 151892 0.68 0.738883
Target:  5'- cCCucGAUUCggcGCCCCagaGCCUGGCCGa- -3'
miRNA:   3'- -GGuuCUAGG---UGGGGg--CGGACUGGCcc -5'
10857 5' -59.3 NC_002794.1 + 52261 0.69 0.733334
Target:  5'- aCGAGAucgagcagcccuUCUACCUCCugggccgcgagaaacGCCUGGCCGuGGa -3'
miRNA:   3'- gGUUCU------------AGGUGGGGG---------------CGGACUGGC-CC- -5'
10857 5' -59.3 NC_002794.1 + 51363 0.69 0.720279
Target:  5'- cCCGAGGcggCCG-CCCCGUCcGGCCGGc -3'
miRNA:   3'- -GGUUCUa--GGUgGGGGCGGaCUGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.