miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10857 5' -59.3 NC_002794.1 + 1615 0.69 0.68232
Target:  5'- uCCGAGG--CGCCCaCCgGCCUGAUaCGGGg -3'
miRNA:   3'- -GGUUCUagGUGGG-GG-CGGACUG-GCCC- -5'
10857 5' -59.3 NC_002794.1 + 1678 0.69 0.68232
Target:  5'- uCCGAGG--CGCCCaCCgGCCUGAUaCGGGg -3'
miRNA:   3'- -GGUUCUagGUGGG-GG-CGGACUG-GCCC- -5'
10857 5' -59.3 NC_002794.1 + 2075 0.71 0.605081
Target:  5'- uCCGAGA-CgACCgCCgGCCUuauacggcGACCGGGg -3'
miRNA:   3'- -GGUUCUaGgUGG-GGgCGGA--------CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 2414 0.66 0.856399
Target:  5'- aCCucAGA-CCACCCUU-CCaggUGACCGGGg -3'
miRNA:   3'- -GGu-UCUaGGUGGGGGcGG---ACUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 2499 0.7 0.653436
Target:  5'- gCCGGGGUCCagACCCCCuCCcaucaGAUUGGGa -3'
miRNA:   3'- -GGUUCUAGG--UGGGGGcGGa----CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 4108 0.68 0.757155
Target:  5'- cCCAGGAccccCCAcCCCCCGUUcGuucCCGGGg -3'
miRNA:   3'- -GGUUCUa---GGU-GGGGGCGGaCu--GGCCC- -5'
10857 5' -59.3 NC_002794.1 + 7954 0.7 0.624415
Target:  5'- cCCGGGG-CCuauuCCCCCGCUUacuCCGGGc -3'
miRNA:   3'- -GGUUCUaGGu---GGGGGCGGAcu-GGCCC- -5'
10857 5' -59.3 NC_002794.1 + 8517 0.66 0.848978
Target:  5'- uUCAAGGccCCGCCCCUGCaCgaaGuCUGGGa -3'
miRNA:   3'- -GGUUCUa-GGUGGGGGCG-Ga--CuGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 8715 0.73 0.492144
Target:  5'- cCCcGGGUCCACaCCCC-CCaGACCGuGGa -3'
miRNA:   3'- -GGuUCUAGGUG-GGGGcGGaCUGGC-CC- -5'
10857 5' -59.3 NC_002794.1 + 12167 0.66 0.870693
Target:  5'- gCCcGGAUcgucgCCGCCgacgCCGCCgcGGCCGGGc -3'
miRNA:   3'- -GGuUCUA-----GGUGGg---GGCGGa-CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 12889 0.66 0.870693
Target:  5'- gCC-GGA-CCACgaCCCGCUcGACUGGGc -3'
miRNA:   3'- -GGuUCUaGGUGg-GGGCGGaCUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 16316 0.67 0.792451
Target:  5'- gCCGgcuGGAUCC-CCCugCC-CCUGGCCGGc -3'
miRNA:   3'- -GGU---UCUAGGuGGG--GGcGGACUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 18729 0.67 0.833613
Target:  5'- gCCGAcGAgCCGCCCCaaCGCCacgacGGCCGGcGg -3'
miRNA:   3'- -GGUU-CUaGGUGGGG--GCGGa----CUGGCC-C- -5'
10857 5' -59.3 NC_002794.1 + 19354 0.66 0.848978
Target:  5'- cCCucg--CCGCccgCCCCGCCcgGAUCGGGc -3'
miRNA:   3'- -GGuucuaGGUG---GGGGCGGa-CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 25298 0.66 0.863639
Target:  5'- uCC-AGAUcCCACCCaucucgaGUCcGACCGGGc -3'
miRNA:   3'- -GGuUCUA-GGUGGGgg-----CGGaCUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 34006 0.69 0.720279
Target:  5'- uCCAAGAccugacgccgUCCAUCaucgaccagagCCGCCUGcuGCCGGGc -3'
miRNA:   3'- -GGUUCU----------AGGUGGg----------GGCGGAC--UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 34064 0.71 0.605081
Target:  5'- gCAcGAcCCGCCguuCCCGCCggcGGCCGGGc -3'
miRNA:   3'- gGUuCUaGGUGG---GGGCGGa--CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 35051 0.67 0.809353
Target:  5'- -gGAGGUCCACCaugaCCGCCgcuGCgUGGGc -3'
miRNA:   3'- ggUUCUAGGUGGg---GGCGGac-UG-GCCC- -5'
10857 5' -59.3 NC_002794.1 + 35256 0.67 0.809353
Target:  5'- cUCAAGAUCUcgaACCUgCGgCUGAaacaCCGGGu -3'
miRNA:   3'- -GGUUCUAGG---UGGGgGCgGACU----GGCCC- -5'
10857 5' -59.3 NC_002794.1 + 39028 0.71 0.605081
Target:  5'- gCAAGAUCUACUUUCGCCggGACggCGGGc -3'
miRNA:   3'- gGUUCUAGGUGGGGGCGGa-CUG--GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.