miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10857 5' -59.3 NC_002794.1 + 39285 1.12 0.001436
Target:  5'- aCCAAGAUCCACCCCCGCCUGACCGGGa -3'
miRNA:   3'- -GGUUCUAGGUGGGGGCGGACUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 41848 0.66 0.870693
Target:  5'- ---cGAUCagcaGCCCcaggCCGCCgggcagGGCCGGGc -3'
miRNA:   3'- gguuCUAGg---UGGG----GGCGGa-----CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 42257 0.67 0.817593
Target:  5'- uCCGAGcccgcUCCGCCCUCGCCccGCCGc- -3'
miRNA:   3'- -GGUUCu----AGGUGGGGGCGGacUGGCcc -5'
10857 5' -59.3 NC_002794.1 + 43494 0.74 0.44791
Target:  5'- --cGGAUCC-CCUCCGCCaGGCCGGu -3'
miRNA:   3'- gguUCUAGGuGGGGGCGGaCUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 44273 0.75 0.389899
Target:  5'- gCCGGGGacggaggagUCCGCgCCCGCCgGGCCGGc -3'
miRNA:   3'- -GGUUCU---------AGGUGgGGGCGGaCUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 44586 0.66 0.848978
Target:  5'- aCCGAG--CCACCgCCGCCUucUUGGGc -3'
miRNA:   3'- -GGUUCuaGGUGGgGGCGGAcuGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 44691 0.67 0.809353
Target:  5'- uCC-AGAcCCACCgCCGCCcGGCCGcGa -3'
miRNA:   3'- -GGuUCUaGGUGGgGGCGGaCUGGC-Cc -5'
10857 5' -59.3 NC_002794.1 + 45896 0.78 0.253207
Target:  5'- aCCGAGccCCGCCCgCCGCCgGcACCGGGc -3'
miRNA:   3'- -GGUUCuaGGUGGG-GGCGGaC-UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 46602 0.66 0.856399
Target:  5'- aCCu--GUCCGCCgCCGUCcGcGCCGGGc -3'
miRNA:   3'- -GGuucUAGGUGGgGGCGGaC-UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 47110 0.66 0.856399
Target:  5'- cUCAAGGagguggaguUCCGCUgCCGCCgacucuucGGCCGGa -3'
miRNA:   3'- -GGUUCU---------AGGUGGgGGCGGa-------CUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 51363 0.69 0.720279
Target:  5'- cCCGAGGcggCCG-CCCCGUCcGGCCGGc -3'
miRNA:   3'- -GGUUCUa--GGUgGGGGCGGaCUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 52261 0.69 0.733334
Target:  5'- aCGAGAucgagcagcccuUCUACCUCCugggccgcgagaaacGCCUGGCCGuGGa -3'
miRNA:   3'- gGUUCU------------AGGUGGGGG---------------CGGACUGGC-CC- -5'
10857 5' -59.3 NC_002794.1 + 52600 0.68 0.765252
Target:  5'- gCCGAcGUCCGCCcgagacgCCCGCCcGACCGc- -3'
miRNA:   3'- -GGUUcUAGGUGG-------GGGCGGaCUGGCcc -5'
10857 5' -59.3 NC_002794.1 + 56543 0.71 0.595439
Target:  5'- gCCAuccGGAgcgcucgccgCCGCCCCCGCCgccGACCGc- -3'
miRNA:   3'- -GGU---UCUa---------GGUGGGGGCGGa--CUGGCcc -5'
10857 5' -59.3 NC_002794.1 + 57399 0.66 0.877555
Target:  5'- aCC-GGcUCCGgCgCCCGCgUGGCCGGc -3'
miRNA:   3'- -GGuUCuAGGUgG-GGGCGgACUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 58439 0.71 0.595439
Target:  5'- gCCGAGG-CCACgCUgCGCCUGGCCGc- -3'
miRNA:   3'- -GGUUCUaGGUG-GGgGCGGACUGGCcc -5'
10857 5' -59.3 NC_002794.1 + 59659 0.69 0.68232
Target:  5'- gCCAcggcgcugcAGAgCCGCCUgCGCCUGcacCCGGGc -3'
miRNA:   3'- -GGU---------UCUaGGUGGGgGCGGACu--GGCCC- -5'
10857 5' -59.3 NC_002794.1 + 62168 0.72 0.570495
Target:  5'- uUCGAGA-CCACCCCCGgcugcaagcucauccCCguccggcucGACCGGGa -3'
miRNA:   3'- -GGUUCUaGGUGGGGGC---------------GGa--------CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 62600 0.69 0.720279
Target:  5'- gCCAGGG-CCACCgCCGCCU--UCGGa -3'
miRNA:   3'- -GGUUCUaGGUGGgGGCGGAcuGGCCc -5'
10857 5' -59.3 NC_002794.1 + 62962 0.69 0.720279
Target:  5'- cCCAAGA-CCACCgCCCGCUuccUGaucaccGCCGGc -3'
miRNA:   3'- -GGUUCUaGGUGG-GGGCGG---AC------UGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.