miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10857 5' -59.3 NC_002794.1 + 195568 0.7 0.671758
Target:  5'- cCCGAG--CCGCCCcgaccgaCCGCCgGACCGGc -3'
miRNA:   3'- -GGUUCuaGGUGGG-------GGCGGaCUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 195199 0.69 0.720279
Target:  5'- gCCGucAGGUCCAgCCCCGCCa-GCUGcGGc -3'
miRNA:   3'- -GGU--UCUAGGUgGGGGCGGacUGGC-CC- -5'
10857 5' -59.3 NC_002794.1 + 194360 0.69 0.710871
Target:  5'- gCCAGGAaCCGCUCCCGCgUGcCCa-- -3'
miRNA:   3'- -GGUUCUaGGUGGGGGCGgACuGGccc -5'
10857 5' -59.3 NC_002794.1 + 192376 0.67 0.809353
Target:  5'- aCCGAGcgcgggcugaCCGCCaCCGCCgcGCCGGGg -3'
miRNA:   3'- -GGUUCua--------GGUGGgGGCGGacUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 191523 0.66 0.846717
Target:  5'- gCCGGGcGUCgGCCCgCGCCUcccgccgcagucggGuCCGGGu -3'
miRNA:   3'- -GGUUC-UAGgUGGGgGCGGA--------------CuGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 190655 0.71 0.605081
Target:  5'- gCAGGAUCacguCGCgCCCGCCgcgccGCCGGGu -3'
miRNA:   3'- gGUUCUAG----GUGgGGGCGGac---UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 189542 0.66 0.84138
Target:  5'- cCCAGucGAUCCACCacauggcgguCCCGCUcggucGGCCGGc -3'
miRNA:   3'- -GGUU--CUAGGUGG----------GGGCGGa----CUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 186256 0.66 0.877555
Target:  5'- cCCAAcGUCgACCggaucaCCGCCUGGCgCGGcGg -3'
miRNA:   3'- -GGUUcUAGgUGGg-----GGCGGACUG-GCC-C- -5'
10857 5' -59.3 NC_002794.1 + 186072 0.69 0.691884
Target:  5'- gCCAccg-CCGCCgCCGCCUucGCCGGGc -3'
miRNA:   3'- -GGUucuaGGUGGgGGCGGAc-UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 185978 0.71 0.614742
Target:  5'- uCCcGGGUCCGCCaCCGUCUccuccGCCGGGc -3'
miRNA:   3'- -GGuUCUAGGUGGgGGCGGAc----UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 183512 0.66 0.859317
Target:  5'- cCCGAGAcccaugucgcggccgUgCGCgCCCCGUCcGcCCGGGg -3'
miRNA:   3'- -GGUUCU---------------AgGUG-GGGGCGGaCuGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 181529 0.67 0.80097
Target:  5'- ----cGUUCGCCCgCCGCCggcgGGCCGGc -3'
miRNA:   3'- gguucUAGGUGGG-GGCGGa---CUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 178531 0.67 0.833613
Target:  5'- ---cGGUCCGCUagguCCCGCUgccGAUCGGGc -3'
miRNA:   3'- gguuCUAGGUGG----GGGCGGa--CUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 154781 0.66 0.84138
Target:  5'- cCUGAGAUCCuuCUgCGacagaUUGACCGGGa -3'
miRNA:   3'- -GGUUCUAGGugGGgGCg----GACUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 151892 0.68 0.738883
Target:  5'- cCCucGAUUCggcGCCCCagaGCCUGGCCGa- -3'
miRNA:   3'- -GGuuCUAGG---UGGGGg--CGGACUGGCcc -5'
10857 5' -59.3 NC_002794.1 + 150959 0.7 0.634092
Target:  5'- uUCGAGAUCUACgaCCUGCCcucGGCCGGu -3'
miRNA:   3'- -GGUUCUAGGUGg-GGGCGGa--CUGGCCc -5'
10857 5' -59.3 NC_002794.1 + 149228 0.69 0.701404
Target:  5'- gCGAGGcgCCGCCgCCGUC--GCCGGGg -3'
miRNA:   3'- gGUUCUa-GGUGGgGGCGGacUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 148815 0.69 0.710871
Target:  5'- gCgGAGAUCuggagaCugCCCCGC--GACCGGGa -3'
miRNA:   3'- -GgUUCUAG------GugGGGGCGgaCUGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 148042 0.69 0.701404
Target:  5'- aCCAcuacgaacGGAUCgGCUCCgCGCuCUGggaGCCGGGa -3'
miRNA:   3'- -GGU--------UCUAGgUGGGG-GCG-GAC---UGGCCC- -5'
10857 5' -59.3 NC_002794.1 + 144483 0.68 0.775031
Target:  5'- aCCc-GAUgUACCCgCCGCC-GAUCGGGc -3'
miRNA:   3'- -GGuuCUAgGUGGG-GGCGGaCUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.