miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10858 5' -55.7 NC_002794.1 + 135005 0.66 0.937959
Target:  5'- cGACGUGAccgugcuuGCGUGUcCCUGAUCuCGg- -3'
miRNA:   3'- -UUGCACU--------CGCACGuGGACUAGcGCag -5'
10858 5' -55.7 NC_002794.1 + 169569 0.66 0.927922
Target:  5'- gGugGUGAGUa-GUACCcGAUCGuCGUCu -3'
miRNA:   3'- -UugCACUCGcaCGUGGaCUAGC-GCAG- -5'
10858 5' -55.7 NC_002794.1 + 157684 0.66 0.927395
Target:  5'- cGCuUG-GCGUGCACCgacaucgugacggUGAUCGCGa- -3'
miRNA:   3'- uUGcACuCGCACGUGG-------------ACUAGCGCag -5'
10858 5' -55.7 NC_002794.1 + 11949 0.66 0.923096
Target:  5'- --gGUGAGCGUGCucuCCgucuacgcucguggaGAUgGCGUCc -3'
miRNA:   3'- uugCACUCGCACGu--GGa--------------CUAgCGCAG- -5'
10858 5' -55.7 NC_002794.1 + 80327 0.67 0.911088
Target:  5'- -uCGcUGAGCGgGCuCCUGAgccucugCGCGUCc -3'
miRNA:   3'- uuGC-ACUCGCaCGuGGACUa------GCGCAG- -5'
10858 5' -55.7 NC_002794.1 + 96560 0.67 0.905005
Target:  5'- cGACGagGAGCGggaGCGgCUGGUCGUGa- -3'
miRNA:   3'- -UUGCa-CUCGCa--CGUgGACUAGCGCag -5'
10858 5' -55.7 NC_002794.1 + 33657 0.67 0.898689
Target:  5'- cGCGcUGAGCGUGCAC----UCGCGcUCg -3'
miRNA:   3'- uUGC-ACUCGCACGUGgacuAGCGC-AG- -5'
10858 5' -55.7 NC_002794.1 + 62251 0.67 0.885371
Target:  5'- gAACGUGuucGCGcUGCGCCUGGUCaaGcCg -3'
miRNA:   3'- -UUGCACu--CGC-ACGUGGACUAGcgCaG- -5'
10858 5' -55.7 NC_002794.1 + 167223 0.68 0.870431
Target:  5'- cAGCGUGAGCacaacggGUGCACCgGAaCGUGa- -3'
miRNA:   3'- -UUGCACUCG-------CACGUGGaCUaGCGCag -5'
10858 5' -55.7 NC_002794.1 + 106938 0.68 0.856106
Target:  5'- aGACGcGGGcCGgcgGCGCCUGGagacaCGCGUCg -3'
miRNA:   3'- -UUGCaCUC-GCa--CGUGGACUa----GCGCAG- -5'
10858 5' -55.7 NC_002794.1 + 126627 0.68 0.840243
Target:  5'- cGGCGUGAGCGcgaccggGCGCCcgGA-CGCGcCg -3'
miRNA:   3'- -UUGCACUCGCa------CGUGGa-CUaGCGCaG- -5'
10858 5' -55.7 NC_002794.1 + 101742 0.69 0.806324
Target:  5'- gGGCGUGAGCuaccgguucGUGCGCgaGAacguccgCGCGUCc -3'
miRNA:   3'- -UUGCACUCG---------CACGUGgaCUa------GCGCAG- -5'
10858 5' -55.7 NC_002794.1 + 105863 0.71 0.721701
Target:  5'- cGACGUGAGCG-GCGCCgagGA-CGUGg- -3'
miRNA:   3'- -UUGCACUCGCaCGUGGa--CUaGCGCag -5'
10858 5' -55.7 NC_002794.1 + 57710 0.72 0.641066
Target:  5'- gAACGUG-GCGcucgaGCACCUGcggCGCGUCu -3'
miRNA:   3'- -UUGCACuCGCa----CGUGGACua-GCGCAG- -5'
10858 5' -55.7 NC_002794.1 + 38808 1.06 0.005268
Target:  5'- gAACGUGAGCGUGCACCUGAUCGCGUCc -3'
miRNA:   3'- -UUGCACUCGCACGUGGACUAGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.