Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10859 | 3' | -57 | NC_002794.1 | + | 180735 | 0.66 | 0.918904 |
Target: 5'- cGcGGACGACGCCGU-CCGgcuccucGGCGg -3' miRNA: 3'- aC-CUUGUUGCGGCAcGGCaac----CCGCa -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 153412 | 0.66 | 0.918904 |
Target: 5'- cGcGAGCGccGCGCgCGgaGCCGagcUGGGCGUg -3' miRNA: 3'- aC-CUUGU--UGCG-GCa-CGGCa--ACCCGCA- -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 183185 | 0.66 | 0.918904 |
Target: 5'- gGGGACcgagacGCGCCGccacGCCGgcGGcGCGUu -3' miRNA: 3'- aCCUUGu-----UGCGGCa---CGGCaaCC-CGCA- -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 143947 | 0.66 | 0.918904 |
Target: 5'- cGaGGACGACuCCGUGUUcugGGGCGUg -3' miRNA: 3'- aC-CUUGUUGcGGCACGGcaaCCCGCA- -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 68487 | 0.66 | 0.913245 |
Target: 5'- cGGAgGCGGCcgaGCCG-GCCGUgcGGGUGa -3' miRNA: 3'- aCCU-UGUUG---CGGCaCGGCAa-CCCGCa -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 176514 | 0.66 | 0.913245 |
Target: 5'- aGGcGCAGCGUucgagCGUGUCGcaucggucccuUUGGGCGa -3' miRNA: 3'- aCCuUGUUGCG-----GCACGGC-----------AACCCGCa -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 137446 | 0.66 | 0.90736 |
Target: 5'- cUGGAACGAcucggcggaaucCGCCGUGUCGgcGGccuCGUa -3' miRNA: 3'- -ACCUUGUU------------GCGGCACGGCaaCCc--GCA- -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 149747 | 0.66 | 0.90736 |
Target: 5'- gUGGAGCGGCGggaCCGcugucucgGCCuGUUGGaGCGg -3' miRNA: 3'- -ACCUUGUUGC---GGCa-------CGG-CAACC-CGCa -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 183552 | 0.66 | 0.901249 |
Target: 5'- gGGGACAcugcGCGCCGaGCCGccgacacGGGCc- -3' miRNA: 3'- aCCUUGU----UGCGGCaCGGCaa-----CCCGca -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 40449 | 0.66 | 0.894916 |
Target: 5'- gGGAGCGAUGCCccgggcGCUGUcccuucGGGCGg -3' miRNA: 3'- aCCUUGUUGCGGca----CGGCAa-----CCCGCa -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 93998 | 0.66 | 0.894916 |
Target: 5'- cGGAcgcCGGCGCCGgcggcggGCCGgcGGGUu- -3' miRNA: 3'- aCCUu--GUUGCGGCa------CGGCaaCCCGca -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 105866 | 0.66 | 0.894916 |
Target: 5'- cGuGAGCGGCGCCGagGaCGUgggGGGUGg -3' miRNA: 3'- aC-CUUGUUGCGGCa-CgGCAa--CCCGCa -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 126594 | 0.66 | 0.894916 |
Target: 5'- cGGGACugAGCGCCGagGCCGgcGccgacgucgcGGCGUg -3' miRNA: 3'- aCCUUG--UUGCGGCa-CGGCaaC----------CCGCA- -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 143274 | 0.66 | 0.894916 |
Target: 5'- cGGccCGGCGCCG-GCCGcucggggucGGGCGg -3' miRNA: 3'- aCCuuGUUGCGGCaCGGCaa-------CCCGCa -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 153036 | 0.66 | 0.894916 |
Target: 5'- gGGAACGACGCgG-GUCccucGGGCGg -3' miRNA: 3'- aCCUUGUUGCGgCaCGGcaa-CCCGCa -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 44276 | 0.66 | 0.89427 |
Target: 5'- gGGGACGGaggaguccgcgccCGCCGgGCCGgcGaGGCGg -3' miRNA: 3'- aCCUUGUU-------------GCGGCaCGGCaaC-CCGCa -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 108454 | 0.67 | 0.888363 |
Target: 5'- cGGcGGCGGCccGCCGgcacggGCCGagGGGCGa -3' miRNA: 3'- aCC-UUGUUG--CGGCa-----CGGCaaCCCGCa -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 185264 | 0.67 | 0.888363 |
Target: 5'- aGcGGACGcCGCCG-GCCGagUGGGCc- -3' miRNA: 3'- aC-CUUGUuGCGGCaCGGCa-ACCCGca -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 179302 | 0.67 | 0.888363 |
Target: 5'- cGGAAC-GCGgCGUGCaUGUUcGGCGUu -3' miRNA: 3'- aCCUUGuUGCgGCACG-GCAAcCCGCA- -5' |
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10859 | 3' | -57 | NC_002794.1 | + | 145467 | 0.67 | 0.885681 |
Target: 5'- aUGGAGCGGuCGCCGaagGCCGaggaucgcgaggaUGaGGCGUg -3' miRNA: 3'- -ACCUUGUU-GCGGCa--CGGCa------------AC-CCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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