miRNA display CGI


Results 41 - 60 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10859 3' -57 NC_002794.1 + 80559 0.67 0.881593
Target:  5'- cGGAcccguuCcGCGCCGUGCCGacgcacGGGCu- -3'
miRNA:   3'- aCCUu-----GuUGCGGCACGGCaa----CCCGca -5'
10859 3' -57 NC_002794.1 + 189458 0.67 0.874612
Target:  5'- cGGccAGCAcGCGCCGaaagGCCGc-GGGCGUc -3'
miRNA:   3'- aCC--UUGU-UGCGGCa---CGGCaaCCCGCA- -5'
10859 3' -57 NC_002794.1 + 124396 0.67 0.867423
Target:  5'- cGGcGCGuCGCCG-GUCGUcgGGGCGc -3'
miRNA:   3'- aCCuUGUuGCGGCaCGGCAa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 107065 0.67 0.864491
Target:  5'- gGGcGCGGCGCCGccggcaugucggaGCCGacGGGCGg -3'
miRNA:   3'- aCCuUGUUGCGGCa------------CGGCaaCCCGCa -5'
10859 3' -57 NC_002794.1 + 123743 0.67 0.867423
Target:  5'- -cGGGCGuucccgaGCCGUGCCGcuucccGGGCGUg -3'
miRNA:   3'- acCUUGUug-----CGGCACGGCaa----CCCGCA- -5'
10859 3' -57 NC_002794.1 + 61863 0.67 0.860032
Target:  5'- aUGG-ACGACGCCGcgcGCCGUcgucGGCGc -3'
miRNA:   3'- -ACCuUGUUGCGGCa--CGGCAac--CCGCa -5'
10859 3' -57 NC_002794.1 + 183552 0.66 0.901249
Target:  5'- gGGGACAcugcGCGCCGaGCCGccgacacGGGCc- -3'
miRNA:   3'- aCCUUGU----UGCGGCaCGGCaa-----CCCGca -5'
10859 3' -57 NC_002794.1 + 149747 0.66 0.90736
Target:  5'- gUGGAGCGGCGggaCCGcugucucgGCCuGUUGGaGCGg -3'
miRNA:   3'- -ACCUUGUUGC---GGCa-------CGG-CAACC-CGCa -5'
10859 3' -57 NC_002794.1 + 176514 0.66 0.913245
Target:  5'- aGGcGCAGCGUucgagCGUGUCGcaucggucccuUUGGGCGa -3'
miRNA:   3'- aCCuUGUUGCG-----GCACGGC-----------AACCCGCa -5'
10859 3' -57 NC_002794.1 + 68487 0.66 0.913245
Target:  5'- cGGAgGCGGCcgaGCCG-GCCGUgcGGGUGa -3'
miRNA:   3'- aCCU-UGUUG---CGGCaCGGCAa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 143947 0.66 0.918904
Target:  5'- cGaGGACGACuCCGUGUUcugGGGCGUg -3'
miRNA:   3'- aC-CUUGUUGcGGCACGGcaaCCCGCA- -5'
10859 3' -57 NC_002794.1 + 183185 0.66 0.918904
Target:  5'- gGGGACcgagacGCGCCGccacGCCGgcGGcGCGUu -3'
miRNA:   3'- aCCUUGu-----UGCGGCa---CGGCaaCC-CGCA- -5'
10859 3' -57 NC_002794.1 + 137446 0.66 0.90736
Target:  5'- cUGGAACGAcucggcggaaucCGCCGUGUCGgcGGccuCGUa -3'
miRNA:   3'- -ACCUUGUU------------GCGGCACGGCaaCCc--GCA- -5'
10859 3' -57 NC_002794.1 + 153036 0.66 0.894916
Target:  5'- gGGAACGACGCgG-GUCccucGGGCGg -3'
miRNA:   3'- aCCUUGUUGCGgCaCGGcaa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 143274 0.66 0.894916
Target:  5'- cGGccCGGCGCCG-GCCGcucggggucGGGCGg -3'
miRNA:   3'- aCCuuGUUGCGGCaCGGCaa-------CCCGCa -5'
10859 3' -57 NC_002794.1 + 126594 0.66 0.894916
Target:  5'- cGGGACugAGCGCCGagGCCGgcGccgacgucgcGGCGUg -3'
miRNA:   3'- aCCUUG--UUGCGGCa-CGGCaaC----------CCGCA- -5'
10859 3' -57 NC_002794.1 + 105866 0.66 0.894916
Target:  5'- cGuGAGCGGCGCCGagGaCGUgggGGGUGg -3'
miRNA:   3'- aC-CUUGUUGCGGCa-CgGCAa--CCCGCa -5'
10859 3' -57 NC_002794.1 + 93998 0.66 0.894916
Target:  5'- cGGAcgcCGGCGCCGgcggcggGCCGgcGGGUu- -3'
miRNA:   3'- aCCUu--GUUGCGGCa------CGGCaaCCCGca -5'
10859 3' -57 NC_002794.1 + 40449 0.66 0.894916
Target:  5'- gGGAGCGAUGCCccgggcGCUGUcccuucGGGCGg -3'
miRNA:   3'- aCCUUGUUGCGGca----CGGCAa-----CCCGCa -5'
10859 3' -57 NC_002794.1 + 44276 0.66 0.89427
Target:  5'- gGGGACGGaggaguccgcgccCGCCGgGCCGgcGaGGCGg -3'
miRNA:   3'- aCCUUGUU-------------GCGGCaCGGCaaC-CCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.