miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10859 3' -57 NC_002794.1 + 38347 1.08 0.003751
Target:  5'- cUGGAACAACGCCGUGCCGUUGGGCGUg -3'
miRNA:   3'- -ACCUUGUUGCGGCACGGCAACCCGCA- -5'
10859 3' -57 NC_002794.1 + 95834 0.74 0.474924
Target:  5'- gGGAGCGGCGgCGgcgGCCGggGaGGCGg -3'
miRNA:   3'- aCCUUGUUGCgGCa--CGGCaaC-CCGCa -5'
10859 3' -57 NC_002794.1 + 121643 0.74 0.487899
Target:  5'- cGGGAgAACGCCGUcGCCGUaacgcgacggccucuUGGGaCGUc -3'
miRNA:   3'- aCCUUgUUGCGGCA-CGGCA---------------ACCC-GCA- -5'
10859 3' -57 NC_002794.1 + 55255 0.74 0.502928
Target:  5'- aGGAG-GACGCCGaagaGCCGggGGGCGg -3'
miRNA:   3'- aCCUUgUUGCGGCa---CGGCaaCCCGCa -5'
10859 3' -57 NC_002794.1 + 191665 0.72 0.600556
Target:  5'- gGGGACGGCGCCGgcaGCgGcgGcGGCGUg -3'
miRNA:   3'- aCCUUGUUGCGGCa--CGgCaaC-CCGCA- -5'
10859 3' -57 NC_002794.1 + 26088 0.72 0.621546
Target:  5'- cGGGGCAGCGCCGacggccccggcgaucGCCG-UGGGCc- -3'
miRNA:   3'- aCCUUGUUGCGGCa--------------CGGCaACCCGca -5'
10859 3' -57 NC_002794.1 + 112333 0.71 0.637564
Target:  5'- gGGAGC-GCGCCG-GCCGgcggcgccggcggcgGGGCGg -3'
miRNA:   3'- aCCUUGuUGCGGCaCGGCaa-------------CCCGCa -5'
10859 3' -57 NC_002794.1 + 185860 0.71 0.650573
Target:  5'- -aGGGCu-CGCCGaauucGCCGUUGGGCGa -3'
miRNA:   3'- acCUUGuuGCGGCa----CGGCAACCCGCa -5'
10859 3' -57 NC_002794.1 + 123067 0.71 0.650573
Target:  5'- gGGGACGAUGCagaaCGUGCCGacccUGGGCc- -3'
miRNA:   3'- aCCUUGUUGCG----GCACGGCa---ACCCGca -5'
10859 3' -57 NC_002794.1 + 32850 0.71 0.650573
Target:  5'- cGGuagcGGCAGCgGCCGaGCCGgcGGGCGg -3'
miRNA:   3'- aCC----UUGUUG-CGGCaCGGCaaCCCGCa -5'
10859 3' -57 NC_002794.1 + 145803 0.71 0.680474
Target:  5'- cGGAcgACGACGCCGccGCCGgc-GGCGa -3'
miRNA:   3'- aCCU--UGUUGCGGCa-CGGCaacCCGCa -5'
10859 3' -57 NC_002794.1 + 784 0.71 0.690375
Target:  5'- uUGGcACggUGCCaaccGUGCCGUccGGGCGg -3'
miRNA:   3'- -ACCuUGuuGCGG----CACGGCAa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 190729 0.7 0.729434
Target:  5'- cGGAgacGCAGCGCCcgccGCCGUcucgacggGGGCGg -3'
miRNA:   3'- aCCU---UGUUGCGGca--CGGCAa-------CCCGCa -5'
10859 3' -57 NC_002794.1 + 149960 0.7 0.729434
Target:  5'- cGGGACGugGCCGaccUGCCGcgGaccGGCGg -3'
miRNA:   3'- aCCUUGUugCGGC---ACGGCaaC---CCGCa -5'
10859 3' -57 NC_002794.1 + 32284 0.7 0.739019
Target:  5'- gGcGAGCGACGCCGccGCCGccGcGGCGg -3'
miRNA:   3'- aC-CUUGUUGCGGCa-CGGCaaC-CCGCa -5'
10859 3' -57 NC_002794.1 + 21870 0.69 0.757912
Target:  5'- cGGuccGCGAgGCCG-GCCGcgGGGUGUc -3'
miRNA:   3'- aCCu--UGUUgCGGCaCGGCaaCCCGCA- -5'
10859 3' -57 NC_002794.1 + 101574 0.69 0.767204
Target:  5'- gGGAGugcCGGcCGCCGcgGCCGgggGGGCGg -3'
miRNA:   3'- aCCUU---GUU-GCGGCa-CGGCaa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 48592 0.69 0.767204
Target:  5'- aGGAGCGGCG-CGUcGCCGUc-GGCGUc -3'
miRNA:   3'- aCCUUGUUGCgGCA-CGGCAacCCGCA- -5'
10859 3' -57 NC_002794.1 + 74357 0.69 0.77638
Target:  5'- cGGAGUAucuacACGCCGUGCUucggGGGCGg -3'
miRNA:   3'- aCCUUGU-----UGCGGCACGGcaa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 123827 0.69 0.77638
Target:  5'- aGGAGCGGCGcCCGUcgauCCGgaugccGGGCGUc -3'
miRNA:   3'- aCCUUGUUGC-GGCAc---GGCaa----CCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.