miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10859 3' -57 NC_002794.1 + 80559 0.67 0.881593
Target:  5'- cGGAcccguuCcGCGCCGUGCCGacgcacGGGCu- -3'
miRNA:   3'- aCCUu-----GuUGCGGCACGGCaa----CCCGca -5'
10859 3' -57 NC_002794.1 + 116888 0.67 0.881593
Target:  5'- gGGGGCGccgGCGCCGUcuccggcgGCCGguccGGCGUc -3'
miRNA:   3'- aCCUUGU---UGCGGCA--------CGGCaac-CCGCA- -5'
10859 3' -57 NC_002794.1 + 140183 0.67 0.881593
Target:  5'- cGGGucgGCGACGgCGUcGUCGagGGGCGa -3'
miRNA:   3'- aCCU---UGUUGCgGCA-CGGCaaCCCGCa -5'
10859 3' -57 NC_002794.1 + 189458 0.67 0.874612
Target:  5'- cGGccAGCAcGCGCCGaaagGCCGc-GGGCGUc -3'
miRNA:   3'- aCC--UUGU-UGCGGCa---CGGCaaCCCGCA- -5'
10859 3' -57 NC_002794.1 + 124396 0.67 0.867423
Target:  5'- cGGcGCGuCGCCG-GUCGUcgGGGCGc -3'
miRNA:   3'- aCCuUGUuGCGGCaCGGCAa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 123743 0.67 0.867423
Target:  5'- -cGGGCGuucccgaGCCGUGCCGcuucccGGGCGUg -3'
miRNA:   3'- acCUUGUug-----CGGCACGGCaa----CCCGCA- -5'
10859 3' -57 NC_002794.1 + 107065 0.67 0.864491
Target:  5'- gGGcGCGGCGCCGccggcaugucggaGCCGacGGGCGg -3'
miRNA:   3'- aCCuUGUUGCGGCa------------CGGCaaCCCGCa -5'
10859 3' -57 NC_002794.1 + 61863 0.67 0.860032
Target:  5'- aUGG-ACGACGCCGcgcGCCGUcgucGGCGc -3'
miRNA:   3'- -ACCuUGUUGCGGCa--CGGCAac--CCGCa -5'
10859 3' -57 NC_002794.1 + 107518 0.67 0.852443
Target:  5'- cGGu-CGACGCCGacgGCCGgcGcGGCGc -3'
miRNA:   3'- aCCuuGUUGCGGCa--CGGCaaC-CCGCa -5'
10859 3' -57 NC_002794.1 + 119079 0.68 0.844664
Target:  5'- cGGAcguacuCGGCGCCcgguUGCUGgUGGGCGUc -3'
miRNA:   3'- aCCUu-----GUUGCGGc---ACGGCaACCCGCA- -5'
10859 3' -57 NC_002794.1 + 95763 0.68 0.844664
Target:  5'- cGGGGCGGCgGCCGcgacggcgGCCG--GGGCGa -3'
miRNA:   3'- aCCUUGUUG-CGGCa-------CGGCaaCCCGCa -5'
10859 3' -57 NC_002794.1 + 91056 0.68 0.835894
Target:  5'- cGGGGCGcGCGUCGUcauguacGCCGUggUGGGCu- -3'
miRNA:   3'- aCCUUGU-UGCGGCA-------CGGCA--ACCCGca -5'
10859 3' -57 NC_002794.1 + 156053 0.68 0.828558
Target:  5'- gGGGGCA--GCCGUGUCGaauagagcGGGCGUu -3'
miRNA:   3'- aCCUUGUugCGGCACGGCaa------CCCGCA- -5'
10859 3' -57 NC_002794.1 + 4194 0.68 0.828558
Target:  5'- aGGcaaGGCGAUGCUGUGacguugcaugaCCGgugUGGGCGUg -3'
miRNA:   3'- aCC---UUGUUGCGGCAC-----------GGCa--ACCCGCA- -5'
10859 3' -57 NC_002794.1 + 51216 0.68 0.828558
Target:  5'- cGGAGCGGCcgGCCG-GCCGaUGGGa-- -3'
miRNA:   3'- aCCUUGUUG--CGGCaCGGCaACCCgca -5'
10859 3' -57 NC_002794.1 + 160720 0.68 0.828558
Target:  5'- -aGAACgGAUGCCGUGUUggauuggugGUUGGGCGa -3'
miRNA:   3'- acCUUG-UUGCGGCACGG---------CAACCCGCa -5'
10859 3' -57 NC_002794.1 + 136435 0.68 0.820245
Target:  5'- cGGAGCGGCgGCUGcguccGCUGUUGGGUc- -3'
miRNA:   3'- aCCUUGUUG-CGGCa----CGGCAACCCGca -5'
10859 3' -57 NC_002794.1 + 144889 0.68 0.820245
Target:  5'- cGGGGCGagACGCuCGcGCCGcUGGGCc- -3'
miRNA:   3'- aCCUUGU--UGCG-GCaCGGCaACCCGca -5'
10859 3' -57 NC_002794.1 + 91227 0.68 0.811768
Target:  5'- gGcGGACGGCGCgGcgGCCGUcGGGCu- -3'
miRNA:   3'- aC-CUUGUUGCGgCa-CGGCAaCCCGca -5'
10859 3' -57 NC_002794.1 + 94987 0.68 0.803135
Target:  5'- cUGGAGCucuguCGCCGcuUGCUGUcgcugaugGGGCGg -3'
miRNA:   3'- -ACCUUGuu---GCGGC--ACGGCAa-------CCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.