miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10859 3' -57 NC_002794.1 + 784 0.71 0.690375
Target:  5'- uUGGcACggUGCCaaccGUGCCGUccGGGCGg -3'
miRNA:   3'- -ACCuUGuuGCGG----CACGGCAa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 4194 0.68 0.828558
Target:  5'- aGGcaaGGCGAUGCUGUGacguugcaugaCCGgugUGGGCGUg -3'
miRNA:   3'- aCC---UUGUUGCGGCAC-----------GGCa--ACCCGCA- -5'
10859 3' -57 NC_002794.1 + 21870 0.69 0.757912
Target:  5'- cGGuccGCGAgGCCG-GCCGcgGGGUGUc -3'
miRNA:   3'- aCCu--UGUUgCGGCaCGGCaaCCCGCA- -5'
10859 3' -57 NC_002794.1 + 26088 0.72 0.621546
Target:  5'- cGGGGCAGCGCCGacggccccggcgaucGCCG-UGGGCc- -3'
miRNA:   3'- aCCUUGUUGCGGCa--------------CGGCaACCCGca -5'
10859 3' -57 NC_002794.1 + 32284 0.7 0.739019
Target:  5'- gGcGAGCGACGCCGccGCCGccGcGGCGg -3'
miRNA:   3'- aC-CUUGUUGCGGCa-CGGCaaC-CCGCa -5'
10859 3' -57 NC_002794.1 + 32850 0.71 0.650573
Target:  5'- cGGuagcGGCAGCgGCCGaGCCGgcGGGCGg -3'
miRNA:   3'- aCC----UUGUUG-CGGCaCGGCaaCCCGCa -5'
10859 3' -57 NC_002794.1 + 38347 1.08 0.003751
Target:  5'- cUGGAACAACGCCGUGCCGUUGGGCGUg -3'
miRNA:   3'- -ACCUUGUUGCGGCACGGCAACCCGCA- -5'
10859 3' -57 NC_002794.1 + 40449 0.66 0.894916
Target:  5'- gGGAGCGAUGCCccgggcGCUGUcccuucGGGCGg -3'
miRNA:   3'- aCCUUGUUGCGGca----CGGCAa-----CCCGCa -5'
10859 3' -57 NC_002794.1 + 44276 0.66 0.89427
Target:  5'- gGGGACGGaggaguccgcgccCGCCGgGCCGgcGaGGCGg -3'
miRNA:   3'- aCCUUGUU-------------GCGGCaCGGCaaC-CCGCa -5'
10859 3' -57 NC_002794.1 + 48592 0.69 0.767204
Target:  5'- aGGAGCGGCG-CGUcGCCGUc-GGCGUc -3'
miRNA:   3'- aCCUUGUUGCgGCA-CGGCAacCCGCA- -5'
10859 3' -57 NC_002794.1 + 51216 0.68 0.828558
Target:  5'- cGGAGCGGCcgGCCG-GCCGaUGGGa-- -3'
miRNA:   3'- aCCUUGUUG--CGGCaCGGCaACCCgca -5'
10859 3' -57 NC_002794.1 + 55255 0.74 0.502928
Target:  5'- aGGAG-GACGCCGaagaGCCGggGGGCGg -3'
miRNA:   3'- aCCUUgUUGCGGCa---CGGCaaCCCGCa -5'
10859 3' -57 NC_002794.1 + 61863 0.67 0.860032
Target:  5'- aUGG-ACGACGCCGcgcGCCGUcgucGGCGc -3'
miRNA:   3'- -ACCuUGUUGCGGCa--CGGCAac--CCGCa -5'
10859 3' -57 NC_002794.1 + 68487 0.66 0.913245
Target:  5'- cGGAgGCGGCcgaGCCG-GCCGUgcGGGUGa -3'
miRNA:   3'- aCCU-UGUUG---CGGCaCGGCAa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 74357 0.69 0.77638
Target:  5'- cGGAGUAucuacACGCCGUGCUucggGGGCGg -3'
miRNA:   3'- aCCUUGU-----UGCGGCACGGcaa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 80559 0.67 0.881593
Target:  5'- cGGAcccguuCcGCGCCGUGCCGacgcacGGGCu- -3'
miRNA:   3'- aCCUu-----GuUGCGGCACGGCaa----CCCGca -5'
10859 3' -57 NC_002794.1 + 89555 0.69 0.794354
Target:  5'- cGGAGgAGCGUCGUGCCGagcgucccGGUGUc -3'
miRNA:   3'- aCCUUgUUGCGGCACGGCaac-----CCGCA- -5'
10859 3' -57 NC_002794.1 + 91056 0.68 0.835894
Target:  5'- cGGGGCGcGCGUCGUcauguacGCCGUggUGGGCu- -3'
miRNA:   3'- aCCUUGU-UGCGGCA-------CGGCA--ACCCGca -5'
10859 3' -57 NC_002794.1 + 91227 0.68 0.811768
Target:  5'- gGcGGACGGCGCgGcgGCCGUcGGGCu- -3'
miRNA:   3'- aC-CUUGUUGCGgCa-CGGCAaCCCGca -5'
10859 3' -57 NC_002794.1 + 93998 0.66 0.894916
Target:  5'- cGGAcgcCGGCGCCGgcggcggGCCGgcGGGUu- -3'
miRNA:   3'- aCCUu--GUUGCGGCa------CGGCaaCCCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.