miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10859 3' -57 NC_002794.1 + 94987 0.68 0.803135
Target:  5'- cUGGAGCucuguCGCCGcuUGCUGUcgcugaugGGGCGg -3'
miRNA:   3'- -ACCUUGuu---GCGGC--ACGGCAa-------CCCGCa -5'
10859 3' -57 NC_002794.1 + 95763 0.68 0.844664
Target:  5'- cGGGGCGGCgGCCGcgacggcgGCCG--GGGCGa -3'
miRNA:   3'- aCCUUGUUG-CGGCa-------CGGCaaCCCGCa -5'
10859 3' -57 NC_002794.1 + 95834 0.74 0.474924
Target:  5'- gGGAGCGGCGgCGgcgGCCGggGaGGCGg -3'
miRNA:   3'- aCCUUGUUGCgGCa--CGGCaaC-CCGCa -5'
10859 3' -57 NC_002794.1 + 101574 0.69 0.767204
Target:  5'- gGGAGugcCGGcCGCCGcgGCCGgggGGGCGg -3'
miRNA:   3'- aCCUU---GUU-GCGGCa-CGGCaa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 105866 0.66 0.894916
Target:  5'- cGuGAGCGGCGCCGagGaCGUgggGGGUGg -3'
miRNA:   3'- aC-CUUGUUGCGGCa-CgGCAa--CCCGCa -5'
10859 3' -57 NC_002794.1 + 107065 0.67 0.864491
Target:  5'- gGGcGCGGCGCCGccggcaugucggaGCCGacGGGCGg -3'
miRNA:   3'- aCCuUGUUGCGGCa------------CGGCaaCCCGCa -5'
10859 3' -57 NC_002794.1 + 107518 0.67 0.852443
Target:  5'- cGGu-CGACGCCGacgGCCGgcGcGGCGc -3'
miRNA:   3'- aCCuuGUUGCGGCa--CGGCaaC-CCGCa -5'
10859 3' -57 NC_002794.1 + 108454 0.67 0.888363
Target:  5'- cGGcGGCGGCccGCCGgcacggGCCGagGGGCGa -3'
miRNA:   3'- aCC-UUGUUG--CGGCa-----CGGCaaCCCGCa -5'
10859 3' -57 NC_002794.1 + 111754 0.69 0.785433
Target:  5'- cUGGcGCcGCGCgGcGCCGUcgGGGCGg -3'
miRNA:   3'- -ACCuUGuUGCGgCaCGGCAa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 112333 0.71 0.637564
Target:  5'- gGGAGC-GCGCCG-GCCGgcggcgccggcggcgGGGCGg -3'
miRNA:   3'- aCCUUGuUGCGGCaCGGCaa-------------CCCGCa -5'
10859 3' -57 NC_002794.1 + 116888 0.67 0.881593
Target:  5'- gGGGGCGccgGCGCCGUcuccggcgGCCGguccGGCGUc -3'
miRNA:   3'- aCCUUGU---UGCGGCA--------CGGCaac-CCGCA- -5'
10859 3' -57 NC_002794.1 + 119079 0.68 0.844664
Target:  5'- cGGAcguacuCGGCGCCcgguUGCUGgUGGGCGUc -3'
miRNA:   3'- aCCUu-----GUUGCGGc---ACGGCaACCCGCA- -5'
10859 3' -57 NC_002794.1 + 121643 0.74 0.487899
Target:  5'- cGGGAgAACGCCGUcGCCGUaacgcgacggccucuUGGGaCGUc -3'
miRNA:   3'- aCCUUgUUGCGGCA-CGGCA---------------ACCC-GCA- -5'
10859 3' -57 NC_002794.1 + 123067 0.71 0.650573
Target:  5'- gGGGACGAUGCagaaCGUGCCGacccUGGGCc- -3'
miRNA:   3'- aCCUUGUUGCG----GCACGGCa---ACCCGca -5'
10859 3' -57 NC_002794.1 + 123743 0.67 0.867423
Target:  5'- -cGGGCGuucccgaGCCGUGCCGcuucccGGGCGUg -3'
miRNA:   3'- acCUUGUug-----CGGCACGGCaa----CCCGCA- -5'
10859 3' -57 NC_002794.1 + 123827 0.69 0.77638
Target:  5'- aGGAGCGGCGcCCGUcgauCCGgaugccGGGCGUc -3'
miRNA:   3'- aCCUUGUUGC-GGCAc---GGCaa----CCCGCA- -5'
10859 3' -57 NC_002794.1 + 124396 0.67 0.867423
Target:  5'- cGGcGCGuCGCCG-GUCGUcgGGGCGc -3'
miRNA:   3'- aCCuUGUuGCGGCaCGGCAa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 126594 0.66 0.894916
Target:  5'- cGGGACugAGCGCCGagGCCGgcGccgacgucgcGGCGUg -3'
miRNA:   3'- aCCUUG--UUGCGGCa-CGGCaaC----------CCGCA- -5'
10859 3' -57 NC_002794.1 + 136435 0.68 0.820245
Target:  5'- cGGAGCGGCgGCUGcguccGCUGUUGGGUc- -3'
miRNA:   3'- aCCUUGUUG-CGGCa----CGGCAACCCGca -5'
10859 3' -57 NC_002794.1 + 137446 0.66 0.90736
Target:  5'- cUGGAACGAcucggcggaaucCGCCGUGUCGgcGGccuCGUa -3'
miRNA:   3'- -ACCUUGUU------------GCGGCACGGCaaCCc--GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.