miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10859 3' -57 NC_002794.1 + 191665 0.72 0.600556
Target:  5'- gGGGACGGCGCCGgcaGCgGcgGcGGCGUg -3'
miRNA:   3'- aCCUUGUUGCGGCa--CGgCaaC-CCGCA- -5'
10859 3' -57 NC_002794.1 + 190729 0.7 0.729434
Target:  5'- cGGAgacGCAGCGCCcgccGCCGUcucgacggGGGCGg -3'
miRNA:   3'- aCCU---UGUUGCGGca--CGGCAa-------CCCGCa -5'
10859 3' -57 NC_002794.1 + 189458 0.67 0.874612
Target:  5'- cGGccAGCAcGCGCCGaaagGCCGc-GGGCGUc -3'
miRNA:   3'- aCC--UUGU-UGCGGCa---CGGCaaCCCGCA- -5'
10859 3' -57 NC_002794.1 + 185860 0.71 0.650573
Target:  5'- -aGGGCu-CGCCGaauucGCCGUUGGGCGa -3'
miRNA:   3'- acCUUGuuGCGGCa----CGGCAACCCGCa -5'
10859 3' -57 NC_002794.1 + 185264 0.67 0.888363
Target:  5'- aGcGGACGcCGCCG-GCCGagUGGGCc- -3'
miRNA:   3'- aC-CUUGUuGCGGCaCGGCa-ACCCGca -5'
10859 3' -57 NC_002794.1 + 183552 0.66 0.901249
Target:  5'- gGGGACAcugcGCGCCGaGCCGccgacacGGGCc- -3'
miRNA:   3'- aCCUUGU----UGCGGCaCGGCaa-----CCCGca -5'
10859 3' -57 NC_002794.1 + 183185 0.66 0.918904
Target:  5'- gGGGACcgagacGCGCCGccacGCCGgcGGcGCGUu -3'
miRNA:   3'- aCCUUGu-----UGCGGCa---CGGCaaCC-CGCA- -5'
10859 3' -57 NC_002794.1 + 180735 0.66 0.918904
Target:  5'- cGcGGACGACGCCGU-CCGgcuccucGGCGg -3'
miRNA:   3'- aC-CUUGUUGCGGCAcGGCaac----CCGCa -5'
10859 3' -57 NC_002794.1 + 179302 0.67 0.888363
Target:  5'- cGGAAC-GCGgCGUGCaUGUUcGGCGUu -3'
miRNA:   3'- aCCUUGuUGCgGCACG-GCAAcCCGCA- -5'
10859 3' -57 NC_002794.1 + 176514 0.66 0.913245
Target:  5'- aGGcGCAGCGUucgagCGUGUCGcaucggucccuUUGGGCGa -3'
miRNA:   3'- aCCuUGUUGCG-----GCACGGC-----------AACCCGCa -5'
10859 3' -57 NC_002794.1 + 160720 0.68 0.828558
Target:  5'- -aGAACgGAUGCCGUGUUggauuggugGUUGGGCGa -3'
miRNA:   3'- acCUUG-UUGCGGCACGG---------CAACCCGCa -5'
10859 3' -57 NC_002794.1 + 156053 0.68 0.828558
Target:  5'- gGGGGCA--GCCGUGUCGaauagagcGGGCGUu -3'
miRNA:   3'- aCCUUGUugCGGCACGGCaa------CCCGCA- -5'
10859 3' -57 NC_002794.1 + 153412 0.66 0.918904
Target:  5'- cGcGAGCGccGCGCgCGgaGCCGagcUGGGCGUg -3'
miRNA:   3'- aC-CUUGU--UGCG-GCa-CGGCa--ACCCGCA- -5'
10859 3' -57 NC_002794.1 + 153036 0.66 0.894916
Target:  5'- gGGAACGACGCgG-GUCccucGGGCGg -3'
miRNA:   3'- aCCUUGUUGCGgCaCGGcaa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 149960 0.7 0.729434
Target:  5'- cGGGACGugGCCGaccUGCCGcgGaccGGCGg -3'
miRNA:   3'- aCCUUGUugCGGC---ACGGCaaC---CCGCa -5'
10859 3' -57 NC_002794.1 + 149747 0.66 0.90736
Target:  5'- gUGGAGCGGCGggaCCGcugucucgGCCuGUUGGaGCGg -3'
miRNA:   3'- -ACCUUGUUGC---GGCa-------CGG-CAACC-CGCa -5'
10859 3' -57 NC_002794.1 + 145803 0.71 0.680474
Target:  5'- cGGAcgACGACGCCGccGCCGgc-GGCGa -3'
miRNA:   3'- aCCU--UGUUGCGGCa-CGGCaacCCGCa -5'
10859 3' -57 NC_002794.1 + 145467 0.67 0.885681
Target:  5'- aUGGAGCGGuCGCCGaagGCCGaggaucgcgaggaUGaGGCGUg -3'
miRNA:   3'- -ACCUUGUU-GCGGCa--CGGCa------------AC-CCGCA- -5'
10859 3' -57 NC_002794.1 + 144889 0.68 0.820245
Target:  5'- cGGGGCGagACGCuCGcGCCGcUGGGCc- -3'
miRNA:   3'- aCCUUGU--UGCG-GCaCGGCaACCCGca -5'
10859 3' -57 NC_002794.1 + 143947 0.66 0.918904
Target:  5'- cGaGGACGACuCCGUGUUcugGGGCGUg -3'
miRNA:   3'- aC-CUUGUUGcGGCACGGcaaCCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.