miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10859 3' -57 NC_002794.1 + 176514 0.66 0.913245
Target:  5'- aGGcGCAGCGUucgagCGUGUCGcaucggucccuUUGGGCGa -3'
miRNA:   3'- aCCuUGUUGCG-----GCACGGC-----------AACCCGCa -5'
10859 3' -57 NC_002794.1 + 68487 0.66 0.913245
Target:  5'- cGGAgGCGGCcgaGCCG-GCCGUgcGGGUGa -3'
miRNA:   3'- aCCU-UGUUG---CGGCaCGGCAa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 143947 0.66 0.918904
Target:  5'- cGaGGACGACuCCGUGUUcugGGGCGUg -3'
miRNA:   3'- aC-CUUGUUGcGGCACGGcaaCCCGCA- -5'
10859 3' -57 NC_002794.1 + 183185 0.66 0.918904
Target:  5'- gGGGACcgagacGCGCCGccacGCCGgcGGcGCGUu -3'
miRNA:   3'- aCCUUGu-----UGCGGCa---CGGCaaCC-CGCA- -5'
10859 3' -57 NC_002794.1 + 153412 0.66 0.918904
Target:  5'- cGcGAGCGccGCGCgCGgaGCCGagcUGGGCGUg -3'
miRNA:   3'- aC-CUUGU--UGCG-GCa-CGGCa--ACCCGCA- -5'
10859 3' -57 NC_002794.1 + 40449 0.66 0.894916
Target:  5'- gGGAGCGAUGCCccgggcGCUGUcccuucGGGCGg -3'
miRNA:   3'- aCCUUGUUGCGGca----CGGCAa-----CCCGCa -5'
10859 3' -57 NC_002794.1 + 44276 0.66 0.89427
Target:  5'- gGGGACGGaggaguccgcgccCGCCGgGCCGgcGaGGCGg -3'
miRNA:   3'- aCCUUGUU-------------GCGGCaCGGCaaC-CCGCa -5'
10859 3' -57 NC_002794.1 + 91056 0.68 0.835894
Target:  5'- cGGGGCGcGCGUCGUcauguacGCCGUggUGGGCu- -3'
miRNA:   3'- aCCUUGU-UGCGGCA-------CGGCA--ACCCGca -5'
10859 3' -57 NC_002794.1 + 61863 0.67 0.860032
Target:  5'- aUGG-ACGACGCCGcgcGCCGUcgucGGCGc -3'
miRNA:   3'- -ACCuUGUUGCGGCa--CGGCAac--CCGCa -5'
10859 3' -57 NC_002794.1 + 123743 0.67 0.867423
Target:  5'- -cGGGCGuucccgaGCCGUGCCGcuucccGGGCGUg -3'
miRNA:   3'- acCUUGUug-----CGGCACGGCaa----CCCGCA- -5'
10859 3' -57 NC_002794.1 + 107065 0.67 0.864491
Target:  5'- gGGcGCGGCGCCGccggcaugucggaGCCGacGGGCGg -3'
miRNA:   3'- aCCuUGUUGCGGCa------------CGGCaaCCCGCa -5'
10859 3' -57 NC_002794.1 + 189458 0.67 0.874612
Target:  5'- cGGccAGCAcGCGCCGaaagGCCGc-GGGCGUc -3'
miRNA:   3'- aCC--UUGU-UGCGGCa---CGGCaaCCCGCA- -5'
10859 3' -57 NC_002794.1 + 124396 0.67 0.867423
Target:  5'- cGGcGCGuCGCCG-GUCGUcgGGGCGc -3'
miRNA:   3'- aCCuUGUuGCGGCaCGGCAa-CCCGCa -5'
10859 3' -57 NC_002794.1 + 80559 0.67 0.881593
Target:  5'- cGGAcccguuCcGCGCCGUGCCGacgcacGGGCu- -3'
miRNA:   3'- aCCUu-----GuUGCGGCACGGCaa----CCCGca -5'
10859 3' -57 NC_002794.1 + 116888 0.67 0.881593
Target:  5'- gGGGGCGccgGCGCCGUcuccggcgGCCGguccGGCGUc -3'
miRNA:   3'- aCCUUGU---UGCGGCA--------CGGCaac-CCGCA- -5'
10859 3' -57 NC_002794.1 + 140183 0.67 0.881593
Target:  5'- cGGGucgGCGACGgCGUcGUCGagGGGCGa -3'
miRNA:   3'- aCCU---UGUUGCgGCA-CGGCaaCCCGCa -5'
10859 3' -57 NC_002794.1 + 145467 0.67 0.885681
Target:  5'- aUGGAGCGGuCGCCGaagGCCGaggaucgcgaggaUGaGGCGUg -3'
miRNA:   3'- -ACCUUGUU-GCGGCa--CGGCa------------AC-CCGCA- -5'
10859 3' -57 NC_002794.1 + 179302 0.67 0.888363
Target:  5'- cGGAAC-GCGgCGUGCaUGUUcGGCGUu -3'
miRNA:   3'- aCCUUGuUGCgGCACG-GCAAcCCGCA- -5'
10859 3' -57 NC_002794.1 + 185264 0.67 0.888363
Target:  5'- aGcGGACGcCGCCG-GCCGagUGGGCc- -3'
miRNA:   3'- aC-CUUGUuGCGGCaCGGCa-ACCCGca -5'
10859 3' -57 NC_002794.1 + 108454 0.67 0.888363
Target:  5'- cGGcGGCGGCccGCCGgcacggGCCGagGGGCGa -3'
miRNA:   3'- aCC-UUGUUG--CGGCa-----CGGCaaCCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.