Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1086 | 3' | -60.9 | NC_000929.1 | + | 21756 | 1.08 | 0.000167 |
|
Target: 5'- gAACACCGGCUCCCCGUCAGCGCGUGCu -3' miRNA: 3'- -UUGUGGCCGAGGGGCAGUCGCGCACG- -5' |
|||||||
| 1086 | 3' | -60.9 | NC_000929.1 | + | 20504 | 0.7 | 0.165606 |
|
Target: 5'- -uCACCGGUUCCCC--CAGCGCc-GCa -3' miRNA: 3'- uuGUGGCCGAGGGGcaGUCGCGcaCG- -5' |
|||||||
| 1086 | 3' | -60.9 | NC_000929.1 | + | 6915 | 0.68 | 0.216537 |
|
Target: 5'- ---uCCGGCUCCCg--CAGCG-GUGCa -3' miRNA: 3'- uuguGGCCGAGGGgcaGUCGCgCACG- -5' |
|||||||
| 1086 | 3' | -60.9 | NC_000929.1 | + | 20647 | 0.68 | 0.240415 |
|
Target: 5'- cGGCAucauCCGGCUgCCCGUCcgcuguuuuagGGCGgGUGa -3' miRNA: 3'- -UUGU----GGCCGAgGGGCAG-----------UCGCgCACg -5' |
|||||||
| 1086 | 3' | -60.9 | NC_000929.1 | + | 21209 | 0.67 | 0.259735 |
|
Target: 5'- -uUACCGGUUCCCCGuUCAGCa----- -3' miRNA: 3'- uuGUGGCCGAGGGGC-AGUCGcgcacg -5' |
|||||||
| 1086 | 3' | -60.9 | NC_000929.1 | + | 23845 | 0.67 | 0.273306 |
|
Target: 5'- cACGCUGGCaaUCUGUCGGCGCa-GCa -3' miRNA: 3'- uUGUGGCCGagGGGCAGUCGCGcaCG- -5' |
|||||||
| 1086 | 3' | -60.9 | NC_000929.1 | + | 8407 | 0.66 | 0.309709 |
|
Target: 5'- gAGCACCuGUUCCaguugcgugaCCGUCAGCucGCG-GCa -3' miRNA: 3'- -UUGUGGcCGAGG----------GGCAGUCG--CGCaCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home