miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10860 3' -65.2 NC_002794.1 + 189446 0.66 0.58238
Target:  5'- gCGCCCGaa--AGUCGG-CCAgcacGCGCCGa -3'
miRNA:   3'- -GCGGGCgacgUCGGCCaGGU----CGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 18700 0.66 0.58238
Target:  5'- gGCaCgGCgGCGG-CGGUCCGGaCGUCGg -3'
miRNA:   3'- gCG-GgCGaCGUCgGCCAGGUC-GCGGC- -5'
10860 3' -65.2 NC_002794.1 + 125018 0.66 0.58238
Target:  5'- gGUCCGCgGCGGCCGucaccaCGGCGCa- -3'
miRNA:   3'- gCGGGCGaCGUCGGCcag---GUCGCGgc -5'
10860 3' -65.2 NC_002794.1 + 87310 0.66 0.58238
Target:  5'- -aCCCGgUaGCGGUCcccaGGUCCAGCGgCGg -3'
miRNA:   3'- gcGGGCgA-CGUCGG----CCAGGUCGCgGC- -5'
10860 3' -65.2 NC_002794.1 + 48177 0.66 0.58238
Target:  5'- aCG-CCGCUGCAG-CGGaaCuGCGCCa -3'
miRNA:   3'- -GCgGGCGACGUCgGCCagGuCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 150594 0.66 0.58238
Target:  5'- gCGCCCGaggaCGGCCGGgcgCCGGCuCUGc -3'
miRNA:   3'- -GCGGGCgac-GUCGGCCa--GGUCGcGGC- -5'
10860 3' -65.2 NC_002794.1 + 126370 0.66 0.58238
Target:  5'- uCG-CCGCUGCGugggcGCCGGggCCuGCGCgGc -3'
miRNA:   3'- -GCgGGCGACGU-----CGGCCa-GGuCGCGgC- -5'
10860 3' -65.2 NC_002794.1 + 116125 0.66 0.58238
Target:  5'- aGUCCGCcGCGGCggcggcggcggCGG-CCAGgGCCu -3'
miRNA:   3'- gCGGGCGaCGUCG-----------GCCaGGUCgCGGc -5'
10860 3' -65.2 NC_002794.1 + 116442 0.66 0.579559
Target:  5'- aCGCCgacgguggcgaugaCGaagaGCGGCCGGUUCuuGGUGCCGg -3'
miRNA:   3'- -GCGG--------------GCga--CGUCGGCCAGG--UCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 53746 0.66 0.572989
Target:  5'- gGCcgCCGCUGCcGCCGccgcugCCGGCGgCGg -3'
miRNA:   3'- gCG--GGCGACGuCGGCca----GGUCGCgGC- -5'
10860 3' -65.2 NC_002794.1 + 33472 0.66 0.572989
Target:  5'- gCGCCCacgccGCUGCAGCUGGgcaacaugCagaAGCuGCUGg -3'
miRNA:   3'- -GCGGG-----CGACGUCGGCCa-------Gg--UCG-CGGC- -5'
10860 3' -65.2 NC_002794.1 + 59596 0.66 0.572989
Target:  5'- uGCCCGCaGCAGCUcuccuccGUgCUGGCGCUGc -3'
miRNA:   3'- gCGGGCGaCGUCGGc------CA-GGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 111797 0.66 0.572989
Target:  5'- gCGCCCGCaggucGUAGCCGcagaugucGUCCcagaaGGCGCgGa -3'
miRNA:   3'- -GCGGGCGa----CGUCGGC--------CAGG-----UCGCGgC- -5'
10860 3' -65.2 NC_002794.1 + 18637 0.66 0.572989
Target:  5'- aCGCCCGCUccgccgGCAcCCGGgacgaCCGuCGCCGc -3'
miRNA:   3'- -GCGGGCGA------CGUcGGCCa----GGUcGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 90663 0.66 0.572989
Target:  5'- uCGCgCCGUUGgGGCCGGccgcguggcuguUCguGUGCCc -3'
miRNA:   3'- -GCG-GGCGACgUCGGCC------------AGguCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 187136 0.66 0.572989
Target:  5'- cCGCCCGUaGCcGCCcaGGUacaCGGCGCaCGu -3'
miRNA:   3'- -GCGGGCGaCGuCGG--CCAg--GUCGCG-GC- -5'
10860 3' -65.2 NC_002794.1 + 24056 0.66 0.567371
Target:  5'- cCGCCCGCcccggaccacacccgUGCGcCCGGgCgGGCGUCGc -3'
miRNA:   3'- -GCGGGCG---------------ACGUcGGCCaGgUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 48894 0.66 0.564567
Target:  5'- gGCCagcguuGCcGCAGCuCGGggccgcuccgcagcgCCAGCGCCa -3'
miRNA:   3'- gCGGg-----CGaCGUCG-GCCa--------------GGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 92331 0.66 0.563633
Target:  5'- gGCCCGg-GCGGgCGGcUCGGCGUCa -3'
miRNA:   3'- gCGGGCgaCGUCgGCCaGGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 188356 0.66 0.563633
Target:  5'- gCGCCCGUc-CGGCCGG--CGGCgGCCGa -3'
miRNA:   3'- -GCGGGCGacGUCGGCCagGUCG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.