miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10860 3' -65.2 NC_002794.1 + 37408 1.07 0.000803
Target:  5'- gCGCCCGCUGCAGCCGGUCCAGCGCCGu -3'
miRNA:   3'- -GCGGGCGACGUCGGCCAGGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 116892 0.85 0.035003
Target:  5'- gCGCCgGCgccgucuccgGCGGCCGGUCCGGCGUCGg -3'
miRNA:   3'- -GCGGgCGa---------CGUCGGCCAGGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 122675 0.8 0.070745
Target:  5'- gGCCCgGCUGU-GCCGGUcgcgCCAGCGCCGg -3'
miRNA:   3'- gCGGG-CGACGuCGGCCA----GGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 50581 0.79 0.09285
Target:  5'- gCGUgCGCgGCGGCUGGguggCCGGCGCCGg -3'
miRNA:   3'- -GCGgGCGaCGUCGGCCa---GGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 136706 0.78 0.099936
Target:  5'- gCGCCCGgUGCAggcGCCGGUCCcGGCGUCc -3'
miRNA:   3'- -GCGGGCgACGU---CGGCCAGG-UCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 194517 0.78 0.10494
Target:  5'- gGCCCGCgUGCcGCCGGcCCagcAGCGCCGc -3'
miRNA:   3'- gCGGGCG-ACGuCGGCCaGG---UCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 154393 0.78 0.107529
Target:  5'- aCGCCCGUucgcgUGguGCCGGUggCCAGCGCUc -3'
miRNA:   3'- -GCGGGCG-----ACguCGGCCA--GGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 119593 0.77 0.112889
Target:  5'- aCGUCCGUcGCAGUCGcUCCAGCGCCu -3'
miRNA:   3'- -GCGGGCGaCGUCGGCcAGGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 114755 0.77 0.121399
Target:  5'- cCGCCCGCcgGC-GCCGGUCCucGGCGgCGa -3'
miRNA:   3'- -GCGGGCGa-CGuCGGCCAGG--UCGCgGC- -5'
10860 3' -65.2 NC_002794.1 + 34040 0.76 0.130502
Target:  5'- cCGCCUGCUGCcgGGCCGG-CCcGCGCaCGa -3'
miRNA:   3'- -GCGGGCGACG--UCGGCCaGGuCGCG-GC- -5'
10860 3' -65.2 NC_002794.1 + 101478 0.76 0.133673
Target:  5'- gCGCCCGCccgaaacgccgGCGGCCGGUCCgAGCggugcggcacacGCCGg -3'
miRNA:   3'- -GCGGGCGa----------CGUCGGCCAGG-UCG------------CGGC- -5'
10860 3' -65.2 NC_002794.1 + 86964 0.75 0.153507
Target:  5'- aCGUCCGCUGCGGCgagcugcgacgaGGUCCGGCGgCu -3'
miRNA:   3'- -GCGGGCGACGUCGg-----------CCAGGUCGCgGc -5'
10860 3' -65.2 NC_002794.1 + 121379 0.75 0.157931
Target:  5'- aGCCgGCcGCcGCCGGgaccgcggCCGGCGCCGg -3'
miRNA:   3'- gCGGgCGaCGuCGGCCa-------GGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 868 0.75 0.161705
Target:  5'- gCGCCCGCgagGCGGUCGG-CguGCGCgCGg -3'
miRNA:   3'- -GCGGGCGa--CGUCGGCCaGguCGCG-GC- -5'
10860 3' -65.2 NC_002794.1 + 49013 0.75 0.169101
Target:  5'- cCGCgCCGCgGCGGCCGcggcgucGUCCGGCGCgGu -3'
miRNA:   3'- -GCG-GGCGaCGUCGGC-------CAGGUCGCGgC- -5'
10860 3' -65.2 NC_002794.1 + 111627 0.75 0.177625
Target:  5'- cCGCCgCgGCcGCcGCCGGUCgGGCGCCGc -3'
miRNA:   3'- -GCGG-G-CGaCGuCGGCCAGgUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 101581 0.75 0.177625
Target:  5'- cCGgCCGCcGCGGCCGGgggggCgGGUGCCGg -3'
miRNA:   3'- -GCgGGCGaCGUCGGCCa----GgUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 120850 0.74 0.181818
Target:  5'- -cCCUGC-GCGGCCGucGUCCAGCGCCu -3'
miRNA:   3'- gcGGGCGaCGUCGGC--CAGGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 150529 0.74 0.186097
Target:  5'- gGCCC-C-GUAGCCGGgCCGGCGCCa -3'
miRNA:   3'- gCGGGcGaCGUCGGCCaGGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 118675 0.73 0.213676
Target:  5'- aCGCCCGCggccGCcGCCGGcggCAGCGCCc -3'
miRNA:   3'- -GCGGGCGa---CGuCGGCCag-GUCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.