miRNA display CGI


Results 21 - 40 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10860 3' -65.2 NC_002794.1 + 51209 0.73 0.213676
Target:  5'- uCGCCCGCggaGCGGCCGG-CCG--GCCGa -3'
miRNA:   3'- -GCGGGCGa--CGUCGGCCaGGUcgCGGC- -5'
10860 3' -65.2 NC_002794.1 + 118675 0.73 0.213676
Target:  5'- aCGCCCGCggccGCcGCCGGcggCAGCGCCc -3'
miRNA:   3'- -GCGGGCGa---CGuCGGCCag-GUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 44399 0.73 0.223621
Target:  5'- gCGCCCGUUcCGGucugaCCGG-CCGGCGCCGa -3'
miRNA:   3'- -GCGGGCGAcGUC-----GGCCaGGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 57409 0.73 0.223621
Target:  5'- gCGCCCGCguggccgGCGuGCUGGUCggcaCGGCGCCc -3'
miRNA:   3'- -GCGGGCGa------CGU-CGGCCAG----GUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 36575 0.73 0.22874
Target:  5'- aCGCgCCGCcgaGCAGgCGGUCCGcGUGCCa -3'
miRNA:   3'- -GCG-GGCGa--CGUCgGCCAGGU-CGCGGc -5'
10860 3' -65.2 NC_002794.1 + 188776 0.73 0.22874
Target:  5'- aGCCCGgUGCagcgguagcGGCCGGcCCcgccgAGCGCCGu -3'
miRNA:   3'- gCGGGCgACG---------UCGGCCaGG-----UCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 68937 0.73 0.22874
Target:  5'- uCGCCCGCg--GGCCGcGgcgCCGGCGCCu -3'
miRNA:   3'- -GCGGGCGacgUCGGC-Ca--GGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 59987 0.73 0.233957
Target:  5'- cCGCUgGCUGC-GCCaGUucaCCGGCGCCGa -3'
miRNA:   3'- -GCGGgCGACGuCGGcCA---GGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 181532 0.73 0.239274
Target:  5'- uCGCCCGCcGcCGGCgGG-CCGGCGCUc -3'
miRNA:   3'- -GCGGGCGaC-GUCGgCCaGGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 104944 0.73 0.239274
Target:  5'- uCGCCCugcguCUGCAGCUuggGGUUCAgGCGCCGu -3'
miRNA:   3'- -GCGGGc----GACGUCGG---CCAGGU-CGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 193808 0.72 0.250211
Target:  5'- gCGCCCGCUcgucugGC-GCCGacgcGUCgCGGCGCCGg -3'
miRNA:   3'- -GCGGGCGA------CGuCGGC----CAG-GUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 32576 0.72 0.255832
Target:  5'- uCGCgCGCggcGguGCCGGggCCGGgGCCGg -3'
miRNA:   3'- -GCGgGCGa--CguCGGCCa-GGUCgCGGC- -5'
10860 3' -65.2 NC_002794.1 + 61511 0.72 0.261557
Target:  5'- uCGCCCGCcggacgGCGGCCG--CCGGCgGCCGc -3'
miRNA:   3'- -GCGGGCGa-----CGUCGGCcaGGUCG-CGGC- -5'
10860 3' -65.2 NC_002794.1 + 107191 0.72 0.267385
Target:  5'- gGCgCCGCcGCcGCCGGccucgcCCGGCGCCGc -3'
miRNA:   3'- gCG-GGCGaCGuCGGCCa-----GGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 37744 0.72 0.273318
Target:  5'- cCGCCgGCgGCGGCgCGG--CGGCGCCGg -3'
miRNA:   3'- -GCGGgCGaCGUCG-GCCagGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 113978 0.71 0.279356
Target:  5'- uCGCgCCGCUccucgaGCAGCCGuUCgaGGCGCCGg -3'
miRNA:   3'- -GCG-GGCGA------CGUCGGCcAGg-UCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 186289 0.71 0.279356
Target:  5'- gGCaCCGCggccagGCGGCCGGUCgccgCGGCGCg- -3'
miRNA:   3'- gCG-GGCGa-----CGUCGGCCAG----GUCGCGgc -5'
10860 3' -65.2 NC_002794.1 + 128751 0.71 0.279356
Target:  5'- aCGCCCGUcgagaGCGGuCCGGUC-AGgGCCGg -3'
miRNA:   3'- -GCGGGCGa----CGUC-GGCCAGgUCgCGGC- -5'
10860 3' -65.2 NC_002794.1 + 62683 0.71 0.291749
Target:  5'- cCGCCUGCgggUGCAGCUGuGUCggCGGCcGCCGa -3'
miRNA:   3'- -GCGGGCG---ACGUCGGC-CAG--GUCG-CGGC- -5'
10860 3' -65.2 NC_002794.1 + 83010 0.71 0.291749
Target:  5'- gCGCCCGauCUGCGcCCcGUcCCGGCGCCGg -3'
miRNA:   3'- -GCGGGC--GACGUcGGcCA-GGUCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.