miRNA display CGI


Results 21 - 40 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10860 3' -65.2 NC_002794.1 + 112284 0.66 0.563633
Target:  5'- gGCcuCCGUgucggGCGGCCccccgGGUCCgacuucGGCGCCGa -3'
miRNA:   3'- gCG--GGCGa----CGUCGG-----CCAGG------UCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 13639 0.66 0.563633
Target:  5'- gGCCCGUucgaccUGCAGCUG-UCCuggcacGUGCCGc -3'
miRNA:   3'- gCGGGCG------ACGUCGGCcAGGu-----CGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 188356 0.66 0.563633
Target:  5'- gCGCCCGUc-CGGCCGG--CGGCgGCCGa -3'
miRNA:   3'- -GCGGGCGacGUCGGCCagGUCG-CGGC- -5'
10860 3' -65.2 NC_002794.1 + 92331 0.66 0.563633
Target:  5'- gGCCCGg-GCGGgCGGcUCGGCGUCa -3'
miRNA:   3'- gCGGGCgaCGUCgGCCaGGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 195295 0.66 0.563633
Target:  5'- gCGCaCCGCUGCAcgcaccGCCGcGUcgCCuuCGCCGa -3'
miRNA:   3'- -GCG-GGCGACGU------CGGC-CA--GGucGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 95770 0.66 0.55432
Target:  5'- gCGgCCGCgacgGCGGCCGGggcgagaGGCGCgGc -3'
miRNA:   3'- -GCgGGCGa---CGUCGGCCagg----UCGCGgC- -5'
10860 3' -65.2 NC_002794.1 + 114125 0.66 0.55432
Target:  5'- aGCUCGUucuUGCcGCCGG-CCagggcgcgcaGGCGCCGc -3'
miRNA:   3'- gCGGGCG---ACGuCGGCCaGG----------UCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 127353 0.66 0.55432
Target:  5'- aCGCUCGCggcgGCGGCgCGG-CCGcucGUGUCGg -3'
miRNA:   3'- -GCGGGCGa---CGUCG-GCCaGGU---CGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 60174 0.66 0.55432
Target:  5'- aGCCCGCgcggGC-GCuCGGccugccucUUCAGCGUCGa -3'
miRNA:   3'- gCGGGCGa---CGuCG-GCC--------AGGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 90216 0.66 0.55432
Target:  5'- cCGCCCGCcGC-GCCGGagCCc-CGCCu -3'
miRNA:   3'- -GCGGGCGaCGuCGGCCa-GGucGCGGc -5'
10860 3' -65.2 NC_002794.1 + 182090 0.66 0.553391
Target:  5'- cCGCCagccagcguucuuCGCgGUAGCgGaUCCGGCGCCa -3'
miRNA:   3'- -GCGG-------------GCGaCGUCGgCcAGGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 193998 0.66 0.545052
Target:  5'- cCGCCCccgGCUucgccuucGCGGCCGccgccgCCGGCGCCn -3'
miRNA:   3'- -GCGGG---CGA--------CGUCGGCca----GGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 29203 0.66 0.545052
Target:  5'- cCGUCCGUccgGCGGUCGGcggccgUCGGCcGCCGa -3'
miRNA:   3'- -GCGGGCGa--CGUCGGCCa-----GGUCG-CGGC- -5'
10860 3' -65.2 NC_002794.1 + 79431 0.66 0.545052
Target:  5'- gGCCCgGCgGCGGCggCGGcgaCCGGCGCgGa -3'
miRNA:   3'- gCGGG-CGaCGUCG--GCCa--GGUCGCGgC- -5'
10860 3' -65.2 NC_002794.1 + 37215 0.66 0.545052
Target:  5'- aGCCCGCacUGCGaCCGGaCCu-CGCCGa -3'
miRNA:   3'- gCGGGCG--ACGUcGGCCaGGucGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 188586 0.66 0.535834
Target:  5'- aCGCCCGCcGCuccacGGCCG--CCuuGCGCCGc -3'
miRNA:   3'- -GCGGGCGaCG-----UCGGCcaGGu-CGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 184500 0.66 0.535834
Target:  5'- aCGCCCGg-GCGGCgCGGgcCCcGCGCgCGg -3'
miRNA:   3'- -GCGGGCgaCGUCG-GCCa-GGuCGCG-GC- -5'
10860 3' -65.2 NC_002794.1 + 15205 0.66 0.535834
Target:  5'- cCGCCCGCgaugGCGGCgucccccGUCCgcgGGCuGCCGg -3'
miRNA:   3'- -GCGGGCGa---CGUCGgc-----CAGG---UCG-CGGC- -5'
10860 3' -65.2 NC_002794.1 + 149232 0.66 0.535834
Target:  5'- gGCgCCGCcGCcgucGCCGGggUCgCGGCGCCa -3'
miRNA:   3'- gCG-GGCGaCGu---CGGCC--AG-GUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 118877 0.66 0.535834
Target:  5'- gGCCaGCUGCAgGUCGGcCCGGUGUUc -3'
miRNA:   3'- gCGGgCGACGU-CGGCCaGGUCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.