miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10860 3' -65.2 NC_002794.1 + 188586 0.66 0.535834
Target:  5'- aCGCCCGCcGCuccacGGCCG--CCuuGCGCCGc -3'
miRNA:   3'- -GCGGGCGaCG-----UCGGCcaGGu-CGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 50730 0.66 0.534915
Target:  5'- cCGCCCGggGCGGCCGccucgacucgcucGUCCgccccgGGCGgCGg -3'
miRNA:   3'- -GCGGGCgaCGUCGGC-------------CAGG------UCGCgGC- -5'
10860 3' -65.2 NC_002794.1 + 167043 0.66 0.534915
Target:  5'- aGUCCGaaacGguGCCGGUCuugcgugggucguCAGUGCCGc -3'
miRNA:   3'- gCGGGCga--CguCGGCCAG-------------GUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 112854 0.67 0.526672
Target:  5'- gCGCgCCGCaGCAGCUGcUgCAGCGCg- -3'
miRNA:   3'- -GCG-GGCGaCGUCGGCcAgGUCGCGgc -5'
10860 3' -65.2 NC_002794.1 + 54852 0.67 0.526672
Target:  5'- aCGCCCGUa--GGCCGGcgCgGGCcGCCGc -3'
miRNA:   3'- -GCGGGCGacgUCGGCCa-GgUCG-CGGC- -5'
10860 3' -65.2 NC_002794.1 + 130675 0.67 0.526672
Target:  5'- gGCuCCGCcGCGGCCucguGGga-GGCGCCGu -3'
miRNA:   3'- gCG-GGCGaCGUCGG----CCaggUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 44226 0.67 0.526672
Target:  5'- gCGCCgaggGCUcGguGCCGGgcggCuCGGUGCCGg -3'
miRNA:   3'- -GCGGg---CGA-CguCGGCCa---G-GUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 185774 0.67 0.526672
Target:  5'- cCGCCCGUcaCAcGUCGG-CCGGCGCgGg -3'
miRNA:   3'- -GCGGGCGacGU-CGGCCaGGUCGCGgC- -5'
10860 3' -65.2 NC_002794.1 + 55350 0.67 0.526672
Target:  5'- gCGCCCGagGCGGCCGaGgcggCCgaGGCgGCCGa -3'
miRNA:   3'- -GCGGGCgaCGUCGGC-Ca---GG--UCG-CGGC- -5'
10860 3' -65.2 NC_002794.1 + 34779 0.67 0.526672
Target:  5'- cCGCCCGC-GcCAGCCGaGUcggccgaaCCGGC-CCGg -3'
miRNA:   3'- -GCGGGCGaC-GUCGGC-CA--------GGUCGcGGC- -5'
10860 3' -65.2 NC_002794.1 + 86922 0.67 0.525759
Target:  5'- aCGCCCGUggcggGCAGgCGGggcgggaUCCGGCGagCGu -3'
miRNA:   3'- -GCGGGCGa----CGUCgGCC-------AGGUCGCg-GC- -5'
10860 3' -65.2 NC_002794.1 + 91103 0.67 0.517569
Target:  5'- aG-CUGCUGUAcGCCGGgcagCUGGUGCCGu -3'
miRNA:   3'- gCgGGCGACGU-CGGCCa---GGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 107515 0.67 0.517569
Target:  5'- uGCCggucgaCGCcGaCGGCCGG-CgCGGCGCCGg -3'
miRNA:   3'- gCGG------GCGaC-GUCGGCCaG-GUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 123248 0.67 0.517569
Target:  5'- aGCCUG-UGCcacuuucgccGGCUGGUCCGG-GCCGc -3'
miRNA:   3'- gCGGGCgACG----------UCGGCCAGGUCgCGGC- -5'
10860 3' -65.2 NC_002794.1 + 131257 0.67 0.517569
Target:  5'- aCG-CCGCcgGCAccaccGCCGGcaccaccgCCGGCGCCGu -3'
miRNA:   3'- -GCgGGCGa-CGU-----CGGCCa-------GGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 123899 0.67 0.517569
Target:  5'- cCGCCCGCccgaGCuGCCG--CCucGCGCCGg -3'
miRNA:   3'- -GCGGGCGa---CGuCGGCcaGGu-CGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 136322 0.67 0.517569
Target:  5'- gCGCCCGCaGCucuucucgguGGCgGG-CCAGCGUgGc -3'
miRNA:   3'- -GCGGGCGaCG----------UCGgCCaGGUCGCGgC- -5'
10860 3' -65.2 NC_002794.1 + 113168 0.67 0.508529
Target:  5'- gCGCgCGCggGCGGCggCGGUCgcggaGGCGCCu -3'
miRNA:   3'- -GCGgGCGa-CGUCG--GCCAGg----UCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 115588 0.67 0.508529
Target:  5'- aCGUagCgGCUGCGGUCGacccgcucGcCCGGCGCCGg -3'
miRNA:   3'- -GCG--GgCGACGUCGGC--------CaGGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 147004 0.67 0.508529
Target:  5'- aCGUCgGCggcgGCGGCCG--CCGGCGCuCGg -3'
miRNA:   3'- -GCGGgCGa---CGUCGGCcaGGUCGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.