miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10860 3' -65.2 NC_002794.1 + 770 0.67 0.508529
Target:  5'- gGCCCGCggUGCauuuGGCaCGGUgCCAaccGUGCCGu -3'
miRNA:   3'- gCGGGCG--ACG----UCG-GCCA-GGU---CGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 868 0.75 0.161705
Target:  5'- gCGCCCGCgagGCGGUCGG-CguGCGCgCGg -3'
miRNA:   3'- -GCGGGCGa--CGUCGGCCaGguCGCG-GC- -5'
10860 3' -65.2 NC_002794.1 + 12186 0.68 0.421555
Target:  5'- aCG-CCGCcGCGGCCGGgcgCCGcucggacGUGCCGg -3'
miRNA:   3'- -GCgGGCGaCGUCGGCCa--GGU-------CGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 12233 0.69 0.414242
Target:  5'- gCGCCgGCgGC-GCC-GUCCgcGGCGCCGa -3'
miRNA:   3'- -GCGGgCGaCGuCGGcCAGG--UCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 13639 0.66 0.563633
Target:  5'- gGCCCGUucgaccUGCAGCUG-UCCuggcacGUGCCGc -3'
miRNA:   3'- gCGGGCG------ACGUCGGCcAGGu-----CGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 14612 0.67 0.508529
Target:  5'- gGCaCCGCgacgggGCcggagacggGGCCGGgcacggagacgCCGGCGCCGc -3'
miRNA:   3'- gCG-GGCGa-----CG---------UCGGCCa----------GGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 14715 0.69 0.390439
Target:  5'- aGCgCUGCUcGCGGCUucggcucggGGUCCGGCGCg- -3'
miRNA:   3'- gCG-GGCGA-CGUCGG---------CCAGGUCGCGgc -5'
10860 3' -65.2 NC_002794.1 + 14773 0.68 0.464411
Target:  5'- aGgCCGCUGaGGCCGGcgaggCCGGCGUg- -3'
miRNA:   3'- gCgGGCGACgUCGGCCa----GGUCGCGgc -5'
10860 3' -65.2 NC_002794.1 + 15205 0.66 0.535834
Target:  5'- cCGCCCGCgaugGCGGCgucccccGUCCgcgGGCuGCCGg -3'
miRNA:   3'- -GCGGGCGa---CGUCGgc-----CAGG---UCG-CGGC- -5'
10860 3' -65.2 NC_002794.1 + 18245 0.66 0.563633
Target:  5'- aGCgCGC-GCGGCCGa-CCGGCGaCCGc -3'
miRNA:   3'- gCGgGCGaCGUCGGCcaGGUCGC-GGC- -5'
10860 3' -65.2 NC_002794.1 + 18637 0.66 0.572989
Target:  5'- aCGCCCGCUccgccgGCAcCCGGgacgaCCGuCGCCGc -3'
miRNA:   3'- -GCGGGCGA------CGUcGGCCa----GGUcGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 18700 0.66 0.58238
Target:  5'- gGCaCgGCgGCGG-CGGUCCGGaCGUCGg -3'
miRNA:   3'- gCG-GgCGaCGUCgGCCAGGUC-GCGGC- -5'
10860 3' -65.2 NC_002794.1 + 19528 0.69 0.390439
Target:  5'- gCGCCgGC-GCGGCgCGGcccgCCGGUGUCGg -3'
miRNA:   3'- -GCGGgCGaCGUCG-GCCa---GGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 24056 0.66 0.567371
Target:  5'- cCGCCCGCcccggaccacacccgUGCGcCCGGgCgGGCGUCGc -3'
miRNA:   3'- -GCGGGCG---------------ACGUcGGCCaGgUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 26636 0.68 0.453267
Target:  5'- gCGUCCGCgcacccggacgGCGGCCGG-CUcgucggcgggguggAGCGCCa -3'
miRNA:   3'- -GCGGGCGa----------CGUCGGCCaGG--------------UCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 29203 0.66 0.545052
Target:  5'- cCGUCCGUccgGCGGUCGGcggccgUCGGCcGCCGa -3'
miRNA:   3'- -GCGGGCGa--CGUCGGCCa-----GGUCG-CGGC- -5'
10860 3' -65.2 NC_002794.1 + 30078 0.67 0.499557
Target:  5'- uCGCCCGgUcgacgaggcgcGCGGCCGGUCCcgacccacCGCCc -3'
miRNA:   3'- -GCGGGCgA-----------CGUCGGCCAGGuc------GCGGc -5'
10860 3' -65.2 NC_002794.1 + 32298 0.68 0.447327
Target:  5'- cCGCcgCCGCgGCGGCCGcG-CCGGCcgcgGCCGg -3'
miRNA:   3'- -GCG--GGCGaCGUCGGC-CaGGUCG----CGGC- -5'
10860 3' -65.2 NC_002794.1 + 32576 0.72 0.255832
Target:  5'- uCGCgCGCggcGguGCCGGggCCGGgGCCGg -3'
miRNA:   3'- -GCGgGCGa--CguCGGCCa-GGUCgCGGC- -5'
10860 3' -65.2 NC_002794.1 + 33472 0.66 0.572989
Target:  5'- gCGCCCacgccGCUGCAGCUGGgcaacaugCagaAGCuGCUGg -3'
miRNA:   3'- -GCGGG-----CGACGUCGGCCa-------Gg--UCG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.