miRNA display CGI


Results 21 - 40 of 218 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10860 3' -65.2 NC_002794.1 + 34040 0.76 0.130502
Target:  5'- cCGCCUGCUGCcgGGCCGG-CCcGCGCaCGa -3'
miRNA:   3'- -GCGGGCGACG--UCGGCCaGGuCGCG-GC- -5'
10860 3' -65.2 NC_002794.1 + 34078 0.68 0.438917
Target:  5'- -uCCCGCcgGCGGCCGGg-CAGcCGUCGg -3'
miRNA:   3'- gcGGGCGa-CGUCGGCCagGUC-GCGGC- -5'
10860 3' -65.2 NC_002794.1 + 34265 0.7 0.33849
Target:  5'- gGCggaCCGCgcGCAGgCGG-CCAGCGCCa -3'
miRNA:   3'- gCG---GGCGa-CGUCgGCCaGGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 34779 0.67 0.526672
Target:  5'- cCGCCCGC-GcCAGCCGaGUcggccgaaCCGGC-CCGg -3'
miRNA:   3'- -GCGGGCGaC-GUCGGC-CA--------GGUCGcGGC- -5'
10860 3' -65.2 NC_002794.1 + 36575 0.73 0.22874
Target:  5'- aCGCgCCGCcgaGCAGgCGGUCCGcGUGCCa -3'
miRNA:   3'- -GCG-GGCGa--CGUCgGCCAGGU-CGCGGc -5'
10860 3' -65.2 NC_002794.1 + 36771 0.7 0.360124
Target:  5'- gGCCacccaGCUGUAGCCGGccgCCGuguaCGCCGa -3'
miRNA:   3'- gCGGg----CGACGUCGGCCa--GGUc---GCGGC- -5'
10860 3' -65.2 NC_002794.1 + 37088 0.67 0.508529
Target:  5'- gGCgCCGUUG-AGCCGGUacucguUCAGCGUCa -3'
miRNA:   3'- gCG-GGCGACgUCGGCCA------GGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 37215 0.66 0.545052
Target:  5'- aGCCCGCacUGCGaCCGGaCCu-CGCCGa -3'
miRNA:   3'- gCGGGCG--ACGUcGGCCaGGucGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 37408 1.07 0.000803
Target:  5'- gCGCCCGCUGCAGCCGGUCCAGCGCCGu -3'
miRNA:   3'- -GCGGGCGACGUCGGCCAGGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 37744 0.72 0.273318
Target:  5'- cCGCCgGCgGCGGCgCGG--CGGCGCCGg -3'
miRNA:   3'- -GCGGgCGaCGUCG-GCCagGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 44226 0.67 0.526672
Target:  5'- gCGCCgaggGCUcGguGCCGGgcggCuCGGUGCCGg -3'
miRNA:   3'- -GCGGg---CGA-CguCGGCCa---G-GUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 44399 0.73 0.223621
Target:  5'- gCGCCCGUUcCGGucugaCCGG-CCGGCGCCGa -3'
miRNA:   3'- -GCGGGCGAcGUC-----GGCCaGGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 44712 0.7 0.345595
Target:  5'- cCGCgaCCGCgGCGacGUCGG-CCGGCGCCGc -3'
miRNA:   3'- -GCG--GGCGaCGU--CGGCCaGGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 46201 0.67 0.489769
Target:  5'- gCGCUCGCUcGCcGCCGuuccggccagcucGUCCAGCucgcucGCCGg -3'
miRNA:   3'- -GCGGGCGA-CGuCGGC-------------CAGGUCG------CGGC- -5'
10860 3' -65.2 NC_002794.1 + 46645 0.68 0.447327
Target:  5'- cCGCCCG-UGCAGCgaGGaaCAGCGCUc -3'
miRNA:   3'- -GCGGGCgACGUCGg-CCagGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 47402 0.68 0.455826
Target:  5'- aGCCCGaaGCcGCCG--UCGGCGCCGu -3'
miRNA:   3'- gCGGGCgaCGuCGGCcaGGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 48177 0.66 0.58238
Target:  5'- aCG-CCGCUGCAG-CGGaaCuGCGCCa -3'
miRNA:   3'- -GCgGGCGACGUCgGCCagGuCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 48894 0.66 0.564567
Target:  5'- gGCCagcguuGCcGCAGCuCGGggccgcuccgcagcgCCAGCGCCa -3'
miRNA:   3'- gCGGg-----CGaCGUCG-GCCa--------------GGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 49013 0.75 0.169101
Target:  5'- cCGCgCCGCgGCGGCCGcggcgucGUCCGGCGCgGu -3'
miRNA:   3'- -GCG-GGCGaCGUCGGC-------CAGGUCGCGgC- -5'
10860 3' -65.2 NC_002794.1 + 49413 0.7 0.352081
Target:  5'- gCGgCCGCggcggcgGCGGCCGucacggcGUCCGGCGCgGu -3'
miRNA:   3'- -GCgGGCGa------CGUCGGC-------CAGGUCGCGgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.