miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10860 3' -65.2 NC_002794.1 + 195295 0.66 0.563633
Target:  5'- gCGCaCCGCUGCAcgcaccGCCGcGUcgCCuuCGCCGa -3'
miRNA:   3'- -GCG-GGCGACGU------CGGC-CA--GGucGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 194517 0.78 0.10494
Target:  5'- gGCCCGCgUGCcGCCGGcCCagcAGCGCCGc -3'
miRNA:   3'- gCGGGCG-ACGuCGGCCaGG---UCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 194290 0.67 0.490655
Target:  5'- gCGCCaCGUc-CAGUC-GUCCAGCGCCa -3'
miRNA:   3'- -GCGG-GCGacGUCGGcCAGGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 194039 0.69 0.398274
Target:  5'- uCGCCCGCcGCcGCCGccgCCGcCGCCGa -3'
miRNA:   3'- -GCGGGCGaCGuCGGCca-GGUcGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 193998 0.66 0.545052
Target:  5'- cCGCCCccgGCUucgccuucGCGGCCGccgccgCCGGCGCCn -3'
miRNA:   3'- -GCGGG---CGA--------CGUCGGCca----GGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 193808 0.72 0.250211
Target:  5'- gCGCCCGCUcgucugGC-GCCGacgcGUCgCGGCGCCGg -3'
miRNA:   3'- -GCGGGCGA------CGuCGGC----CAG-GUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 193425 0.69 0.390439
Target:  5'- cCGCCCGUcgucCAGCC-GUCCGGCacGCCGc -3'
miRNA:   3'- -GCGGGCGac--GUCGGcCAGGUCG--CGGC- -5'
10860 3' -65.2 NC_002794.1 + 193176 0.69 0.406209
Target:  5'- aGCCCGCgccGC-GCCagcguguccaGGUCguGCGCCa -3'
miRNA:   3'- gCGGGCGa--CGuCGG----------CCAGguCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 192448 0.68 0.447327
Target:  5'- uCGCgCGCcucGCAGUCGcGcgccaCCAGCGCCGa -3'
miRNA:   3'- -GCGgGCGa--CGUCGGC-Ca----GGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 191639 0.68 0.447327
Target:  5'- cCGCCuCGCcguccaGCAgcccGCCGGgggaCGGCGCCGg -3'
miRNA:   3'- -GCGG-GCGa-----CGU----CGGCCag--GUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 191533 0.69 0.382705
Target:  5'- gGCCCGCgccucccgccGCAGUCgGGUCCGGguccacgaCGCCGc -3'
miRNA:   3'- gCGGGCGa---------CGUCGG-CCAGGUC--------GCGGC- -5'
10860 3' -65.2 NC_002794.1 + 190932 0.69 0.382705
Target:  5'- gGCCCGCagccgGUAGCaCGGccccagcagcaCCAGCGCCu -3'
miRNA:   3'- gCGGGCGa----CGUCG-GCCa----------GGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 190668 0.67 0.494207
Target:  5'- gCGCCCGCcGCGccGCCGGgucuccacgcacaccUCCcggcgcAGCGUCGg -3'
miRNA:   3'- -GCGGGCGaCGU--CGGCC---------------AGG------UCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 190115 0.69 0.367547
Target:  5'- cCGUCCGC-GCcgaAG-CGGUCCGcGCGCCGa -3'
miRNA:   3'- -GCGGGCGaCG---UCgGCCAGGU-CGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 190010 0.68 0.428945
Target:  5'- gGCCCGUccggguccaucgGCGGCCGGUagcgcacgUAGCGCUGa -3'
miRNA:   3'- gCGGGCGa-----------CGUCGGCCAg-------GUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 189887 0.69 0.414242
Target:  5'- gGCCCGCUcgGGCCcGccgUCAGCGCCGc -3'
miRNA:   3'- gCGGGCGAcgUCGGcCa--GGUCGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 189564 0.71 0.317815
Target:  5'- gGuCCCGCUcgGuCGGCCGGcccgggCCGGCGCCc -3'
miRNA:   3'- gC-GGGCGA--C-GUCGGCCa-----GGUCGCGGc -5'
10860 3' -65.2 NC_002794.1 + 189446 0.66 0.58238
Target:  5'- gCGCCCGaa--AGUCGG-CCAgcacGCGCCGa -3'
miRNA:   3'- -GCGGGCgacgUCGGCCaGGU----CGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 188940 0.69 0.387333
Target:  5'- gGCCCGCUGUccgGGCgugcgcagguucaGGUCCA-CGCCGc -3'
miRNA:   3'- gCGGGCGACG---UCGg------------CCAGGUcGCGGC- -5'
10860 3' -65.2 NC_002794.1 + 188776 0.73 0.22874
Target:  5'- aGCCCGgUGCagcgguagcGGCCGGcCCcgccgAGCGCCGu -3'
miRNA:   3'- gCGGGCgACG---------UCGGCCaGG-----UCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.