Results 1 - 20 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10860 | 3' | -65.2 | NC_002794.1 | + | 37408 | 1.07 | 0.000803 |
Target: 5'- gCGCCCGCUGCAGCCGGUCCAGCGCCGu -3' miRNA: 3'- -GCGGGCGACGUCGGCCAGGUCGCGGC- -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 111797 | 0.66 | 0.572989 |
Target: 5'- gCGCCCGCaggucGUAGCCGcagaugucGUCCcagaaGGCGCgGa -3' miRNA: 3'- -GCGGGCGa----CGUCGGC--------CAGG-----UCGCGgC- -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 59596 | 0.66 | 0.572989 |
Target: 5'- uGCCCGCaGCAGCUcuccuccGUgCUGGCGCUGc -3' miRNA: 3'- gCGGGCGaCGUCGGc------CA-GGUCGCGGC- -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 33472 | 0.66 | 0.572989 |
Target: 5'- gCGCCCacgccGCUGCAGCUGGgcaacaugCagaAGCuGCUGg -3' miRNA: 3'- -GCGGG-----CGACGUCGGCCa-------Gg--UCG-CGGC- -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 53746 | 0.66 | 0.572989 |
Target: 5'- gGCcgCCGCUGCcGCCGccgcugCCGGCGgCGg -3' miRNA: 3'- gCG--GGCGACGuCGGCca----GGUCGCgGC- -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 195295 | 0.66 | 0.563633 |
Target: 5'- gCGCaCCGCUGCAcgcaccGCCGcGUcgCCuuCGCCGa -3' miRNA: 3'- -GCG-GGCGACGU------CGGC-CA--GGucGCGGC- -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 48894 | 0.66 | 0.564567 |
Target: 5'- gGCCagcguuGCcGCAGCuCGGggccgcuccgcagcgCCAGCGCCa -3' miRNA: 3'- gCGGg-----CGaCGUCG-GCCa--------------GGUCGCGGc -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 24056 | 0.66 | 0.567371 |
Target: 5'- cCGCCCGCcccggaccacacccgUGCGcCCGGgCgGGCGUCGc -3' miRNA: 3'- -GCGGGCG---------------ACGUcGGCCaGgUCGCGGC- -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 92331 | 0.66 | 0.563633 |
Target: 5'- gGCCCGg-GCGGgCGGcUCGGCGUCa -3' miRNA: 3'- gCGGGCgaCGUCgGCCaGGUCGCGGc -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 18637 | 0.66 | 0.572989 |
Target: 5'- aCGCCCGCUccgccgGCAcCCGGgacgaCCGuCGCCGc -3' miRNA: 3'- -GCGGGCGA------CGUcGGCCa----GGUcGCGGC- -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 90663 | 0.66 | 0.572989 |
Target: 5'- uCGCgCCGUUGgGGCCGGccgcguggcuguUCguGUGCCc -3' miRNA: 3'- -GCG-GGCGACgUCGGCC------------AGguCGCGGc -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 187136 | 0.66 | 0.572989 |
Target: 5'- cCGCCCGUaGCcGCCcaGGUacaCGGCGCaCGu -3' miRNA: 3'- -GCGGGCGaCGuCGG--CCAg--GUCGCG-GC- -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 116125 | 0.66 | 0.58238 |
Target: 5'- aGUCCGCcGCGGCggcggcggcggCGG-CCAGgGCCu -3' miRNA: 3'- gCGGGCGaCGUCG-----------GCCaGGUCgCGGc -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 126370 | 0.66 | 0.58238 |
Target: 5'- uCG-CCGCUGCGugggcGCCGGggCCuGCGCgGc -3' miRNA: 3'- -GCgGGCGACGU-----CGGCCa-GGuCGCGgC- -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 150594 | 0.66 | 0.58238 |
Target: 5'- gCGCCCGaggaCGGCCGGgcgCCGGCuCUGc -3' miRNA: 3'- -GCGGGCgac-GUCGGCCa--GGUCGcGGC- -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 48177 | 0.66 | 0.58238 |
Target: 5'- aCG-CCGCUGCAG-CGGaaCuGCGCCa -3' miRNA: 3'- -GCgGGCGACGUCgGCCagGuCGCGGc -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 87310 | 0.66 | 0.58238 |
Target: 5'- -aCCCGgUaGCGGUCcccaGGUCCAGCGgCGg -3' miRNA: 3'- gcGGGCgA-CGUCGG----CCAGGUCGCgGC- -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 125018 | 0.66 | 0.58238 |
Target: 5'- gGUCCGCgGCGGCCGucaccaCGGCGCa- -3' miRNA: 3'- gCGGGCGaCGUCGGCcag---GUCGCGgc -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 18700 | 0.66 | 0.58238 |
Target: 5'- gGCaCgGCgGCGG-CGGUCCGGaCGUCGg -3' miRNA: 3'- gCG-GgCGaCGUCgGCCAGGUC-GCGGC- -5' |
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10860 | 3' | -65.2 | NC_002794.1 | + | 116442 | 0.66 | 0.579559 |
Target: 5'- aCGCCgacgguggcgaugaCGaagaGCGGCCGGUUCuuGGUGCCGg -3' miRNA: 3'- -GCGG--------------GCga--CGUCGGCCAGG--UCGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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