miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10860 5' -57.2 NC_002794.1 + 179211 0.66 0.885947
Target:  5'- cGGCGGCACGaCggacguggcccagauGCaacaGGUCggcgUCGGCGAGa -3'
miRNA:   3'- -UCGUCGUGC-G---------------UGa---CCAGa---AGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 179473 0.66 0.883191
Target:  5'- -uCAGCGCGCACUcgaccGGUUgUCGGCc-- -3'
miRNA:   3'- ucGUCGUGCGUGA-----CCAGaAGCCGcuu -5'
10860 5' -57.2 NC_002794.1 + 59226 0.66 0.881101
Target:  5'- cGCGGCGCGCgagcucuucgcgcuGCUGccCUacgUCGGCGAGc -3'
miRNA:   3'- uCGUCGUGCG--------------UGACcaGA---AGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 87335 0.66 0.876148
Target:  5'- cGGCGGCAgGUuccccagcaGCgGGUCcggCGGCGAGc -3'
miRNA:   3'- -UCGUCGUgCG---------UGaCCAGaa-GCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 114746 0.66 0.876148
Target:  5'- gAGcCGGCGCcgcccgccgGCGCcGGUCcUCGGCGGc -3'
miRNA:   3'- -UC-GUCGUG---------CGUGaCCAGaAGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 53770 0.66 0.86889
Target:  5'- cGGCGGCgggacgcccgcgACGCGCccggcgGGUUUcUCGGCGGGa -3'
miRNA:   3'- -UCGUCG------------UGCGUGa-----CCAGA-AGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 127363 0.66 0.861421
Target:  5'- cGGCGGCGCGgcCGCUcGUg-UCGGCGGAc -3'
miRNA:   3'- -UCGUCGUGC--GUGAcCAgaAGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 114196 0.66 0.861421
Target:  5'- cAGCGGCGC-CACggccgGcGUCUcCGGCGGc -3'
miRNA:   3'- -UCGUCGUGcGUGa----C-CAGAaGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 32417 0.66 0.861421
Target:  5'- uGCAGCACGaaGCUGaGauUCUgcgCGGCGAu -3'
miRNA:   3'- uCGUCGUGCg-UGAC-C--AGAa--GCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 107225 0.67 0.845877
Target:  5'- gGGCGGCGCGCGacgGGgg--CGGCGu- -3'
miRNA:   3'- -UCGUCGUGCGUga-CCagaaGCCGCuu -5'
10860 5' -57.2 NC_002794.1 + 62098 0.67 0.845877
Target:  5'- cGCGGCGCGCcggacgguCUGGUgCgugUCGaGCGAc -3'
miRNA:   3'- uCGUCGUGCGu-------GACCA-Ga--AGC-CGCUu -5'
10860 5' -57.2 NC_002794.1 + 56293 0.67 0.845877
Target:  5'- gAGCAcgauGCGCGCGCggucgcGGUCgcUGGCGGc -3'
miRNA:   3'- -UCGU----CGUGCGUGa-----CCAGaaGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 114544 0.67 0.845877
Target:  5'- gAGCuGCGCGaGCUGuUCUUCGGCc-- -3'
miRNA:   3'- -UCGuCGUGCgUGACcAGAAGCCGcuu -5'
10860 5' -57.2 NC_002794.1 + 12545 0.67 0.837815
Target:  5'- cGCGGCGCGCAC-GG-CUacCGGCGc- -3'
miRNA:   3'- uCGUCGUGCGUGaCCaGAa-GCCGCuu -5'
10860 5' -57.2 NC_002794.1 + 121581 0.67 0.837815
Target:  5'- cAGCGuGaCGgGCGCggGGUCgUUCGGCGAc -3'
miRNA:   3'- -UCGU-C-GUgCGUGa-CCAG-AAGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 112647 0.67 0.837815
Target:  5'- gAGCAGCAgGCAgaGGcUCUcgcaGGCGGc -3'
miRNA:   3'- -UCGUCGUgCGUgaCC-AGAag--CCGCUu -5'
10860 5' -57.2 NC_002794.1 + 57416 0.67 0.829568
Target:  5'- cGUGGCcgGCGUGCUGGUCggcaCGGCGc- -3'
miRNA:   3'- uCGUCG--UGCGUGACCAGaa--GCCGCuu -5'
10860 5' -57.2 NC_002794.1 + 125532 0.67 0.829568
Target:  5'- cGCGGCGaacgaGCGCggcGGcagcgguuUCUUCGGCGAc -3'
miRNA:   3'- uCGUCGUg----CGUGa--CC--------AGAAGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 140152 0.67 0.829568
Target:  5'- aGGCGGuCGCGCAguauuuacgauuUUGGaUCgggUCGGCGAc -3'
miRNA:   3'- -UCGUC-GUGCGU------------GACC-AGa--AGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 147014 0.67 0.828733
Target:  5'- cGGCGGcCGCcgGCGCUcGGUCUaaggacgaagccgUCGGCGGc -3'
miRNA:   3'- -UCGUC-GUG--CGUGA-CCAGA-------------AGCCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.