Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 37442 | 1.06 | 0.003712 |
Target: 5'- cAGCAGCACGCACUGGUCUUCGGCGAAg -3' miRNA: 3'- -UCGUCGUGCGUGACCAGAAGCCGCUU- -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 91673 | 0.75 | 0.399481 |
Target: 5'- cGCAcGUggGCGCGCUGGUCUUCaGCGGc -3' miRNA: 3'- uCGU-CG--UGCGUGACCAGAAGcCGCUu -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 110676 | 0.75 | 0.408004 |
Target: 5'- uGCAGCACGCugUGGUCgUCGccCGAGu -3' miRNA: 3'- uCGUCGUGCGugACCAGaAGCc-GCUU- -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 118722 | 0.74 | 0.443205 |
Target: 5'- cAGCuGCGCGUACUGGgcgCUgcUCGGCGc- -3' miRNA: 3'- -UCGuCGUGCGUGACCa--GA--AGCCGCuu -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 139733 | 0.73 | 0.499029 |
Target: 5'- cGGCAGCACGC-CgacGGUCaacaggUUGGCGAGa -3' miRNA: 3'- -UCGUCGUGCGuGa--CCAGa-----AGCCGCUU- -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 2714 | 0.72 | 0.567768 |
Target: 5'- gGGCGGuCugGgGC-GGUCUUUGGCGAc -3' miRNA: 3'- -UCGUC-GugCgUGaCCAGAAGCCGCUu -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 113164 | 0.72 | 0.567768 |
Target: 5'- uGUAGCGCGCGCgGG-CggCGGCGGu -3' miRNA: 3'- uCGUCGUGCGUGaCCaGaaGCCGCUu -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 140088 | 0.71 | 0.587895 |
Target: 5'- cAGCAGgACGUccaUGGUCggCGGCGAu -3' miRNA: 3'- -UCGUCgUGCGug-ACCAGaaGCCGCUu -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 47788 | 0.71 | 0.608148 |
Target: 5'- gAGCGGC-CGCAgUacacGGUC-UCGGCGAAc -3' miRNA: 3'- -UCGUCGuGCGUgA----CCAGaAGCCGCUU- -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 148204 | 0.71 | 0.618305 |
Target: 5'- cGGCgccGGCGCGCGCUcgaucGGUCUccggUCGGCGu- -3' miRNA: 3'- -UCG---UCGUGCGUGA-----CCAGA----AGCCGCuu -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 184043 | 0.7 | 0.658959 |
Target: 5'- cGCAGCGCGC---GGUCgcgggccgCGGCGAAg -3' miRNA: 3'- uCGUCGUGCGugaCCAGaa------GCCGCUU- -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 11247 | 0.7 | 0.679191 |
Target: 5'- uAGCuGCACGUACgaggGGUCg--GGCGAc -3' miRNA: 3'- -UCGuCGUGCGUGa---CCAGaagCCGCUu -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 136440 | 0.69 | 0.70923 |
Target: 5'- cGGCGGCugcgucCGCugUugGGUCaggUCGGCGAGg -3' miRNA: 3'- -UCGUCGu-----GCGugA--CCAGa--AGCCGCUU- -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 124393 | 0.69 | 0.728948 |
Target: 5'- cGGCGGCGCGuCGCcGGUCgUCGGgGc- -3' miRNA: 3'- -UCGUCGUGC-GUGaCCAGaAGCCgCuu -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 107388 | 0.69 | 0.748335 |
Target: 5'- cGGCcgucgGGCugGCGCUGaUCcUCGGCGGc -3' miRNA: 3'- -UCG-----UCGugCGUGACcAGaAGCCGCUu -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 113403 | 0.68 | 0.76732 |
Target: 5'- uGCAGCACccggaGCUGGUCcagcacgUCGGCGu- -3' miRNA: 3'- uCGUCGUGcg---UGACCAGa------AGCCGCuu -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 184070 | 0.68 | 0.76732 |
Target: 5'- nAGCGGCACGCGCccacGGUgUagCGGCaGAAc -3' miRNA: 3'- -UCGUCGUGCGUGa---CCAgAa-GCCG-CUU- -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 14471 | 0.68 | 0.775712 |
Target: 5'- gAGCGGCGCGCcgcgcucGCUGuUCgcggCGGCGGc -3' miRNA: 3'- -UCGUCGUGCG-------UGACcAGaa--GCCGCUu -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 117368 | 0.68 | 0.784916 |
Target: 5'- gAGCGGCGggccgccUGCAC-GGUCg-CGGCGAAg -3' miRNA: 3'- -UCGUCGU-------GCGUGaCCAGaaGCCGCUU- -5' |
|||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 54241 | 0.68 | 0.794884 |
Target: 5'- aAGCGGCcgaGCGCGC-GGUCcaCGGCGc- -3' miRNA: 3'- -UCGUCG---UGCGUGaCCAGaaGCCGCuu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home