miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10860 5' -57.2 NC_002794.1 + 36966 0.67 0.827058
Target:  5'- aGGCAGUcgcgcaggaggaucGCGCGCaGGUCggcgaGGCGGAc -3'
miRNA:   3'- -UCGUCG--------------UGCGUGaCCAGaag--CCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 157515 0.67 0.821143
Target:  5'- cGGCGG-ACGCGCUGGggauccagUUGGCGGc -3'
miRNA:   3'- -UCGUCgUGCGUGACCaga-----AGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 70042 0.67 0.812549
Target:  5'- cAGCAGCACGUA--GGUCgcccggUCgGGCGGc -3'
miRNA:   3'- -UCGUCGUGCGUgaCCAGa-----AG-CCGCUu -5'
10860 5' -57.2 NC_002794.1 + 48527 0.68 0.794884
Target:  5'- -aCAGCACGCACaGGcUCgggUCGGcCGAc -3'
miRNA:   3'- ucGUCGUGCGUGaCC-AGa--AGCC-GCUu -5'
10860 5' -57.2 NC_002794.1 + 54241 0.68 0.794884
Target:  5'- aAGCGGCcgaGCGCGC-GGUCcaCGGCGc- -3'
miRNA:   3'- -UCGUCG---UGCGUGaCCAGaaGCCGCuu -5'
10860 5' -57.2 NC_002794.1 + 117368 0.68 0.784916
Target:  5'- gAGCGGCGggccgccUGCAC-GGUCg-CGGCGAAg -3'
miRNA:   3'- -UCGUCGU-------GCGUGaCCAGaaGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 14471 0.68 0.775712
Target:  5'- gAGCGGCGCGCcgcgcucGCUGuUCgcggCGGCGGc -3'
miRNA:   3'- -UCGUCGUGCG-------UGACcAGaa--GCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 184070 0.68 0.76732
Target:  5'- nAGCGGCACGCGCccacGGUgUagCGGCaGAAc -3'
miRNA:   3'- -UCGUCGUGCGUGa---CCAgAa-GCCG-CUU- -5'
10860 5' -57.2 NC_002794.1 + 113403 0.68 0.76732
Target:  5'- uGCAGCACccggaGCUGGUCcagcacgUCGGCGu- -3'
miRNA:   3'- uCGUCGUGcg---UGACCAGa------AGCCGCuu -5'
10860 5' -57.2 NC_002794.1 + 107388 0.69 0.748335
Target:  5'- cGGCcgucgGGCugGCGCUGaUCcUCGGCGGc -3'
miRNA:   3'- -UCG-----UCGugCGUGACcAGaAGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 124393 0.69 0.728948
Target:  5'- cGGCGGCGCGuCGCcGGUCgUCGGgGc- -3'
miRNA:   3'- -UCGUCGUGC-GUGaCCAGaAGCCgCuu -5'
10860 5' -57.2 NC_002794.1 + 136440 0.69 0.70923
Target:  5'- cGGCGGCugcgucCGCugUugGGUCaggUCGGCGAGg -3'
miRNA:   3'- -UCGUCGu-----GCGugA--CCAGa--AGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 11247 0.7 0.679191
Target:  5'- uAGCuGCACGUACgaggGGUCg--GGCGAc -3'
miRNA:   3'- -UCGuCGUGCGUGa---CCAGaagCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 184043 0.7 0.658959
Target:  5'- cGCAGCGCGC---GGUCgcgggccgCGGCGAAg -3'
miRNA:   3'- uCGUCGUGCGugaCCAGaa------GCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 148204 0.71 0.618305
Target:  5'- cGGCgccGGCGCGCGCUcgaucGGUCUccggUCGGCGu- -3'
miRNA:   3'- -UCG---UCGUGCGUGA-----CCAGA----AGCCGCuu -5'
10860 5' -57.2 NC_002794.1 + 47788 0.71 0.608148
Target:  5'- gAGCGGC-CGCAgUacacGGUC-UCGGCGAAc -3'
miRNA:   3'- -UCGUCGuGCGUgA----CCAGaAGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 140088 0.71 0.587895
Target:  5'- cAGCAGgACGUccaUGGUCggCGGCGAu -3'
miRNA:   3'- -UCGUCgUGCGug-ACCAGaaGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 113164 0.72 0.567768
Target:  5'- uGUAGCGCGCGCgGG-CggCGGCGGu -3'
miRNA:   3'- uCGUCGUGCGUGaCCaGaaGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 2714 0.72 0.567768
Target:  5'- gGGCGGuCugGgGC-GGUCUUUGGCGAc -3'
miRNA:   3'- -UCGUC-GugCgUGaCCAGAAGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 139733 0.73 0.499029
Target:  5'- cGGCAGCACGC-CgacGGUCaacaggUUGGCGAGa -3'
miRNA:   3'- -UCGUCGUGCGuGa--CCAGa-----AGCCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.