miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10860 5' -57.2 NC_002794.1 + 2714 0.72 0.567768
Target:  5'- gGGCGGuCugGgGC-GGUCUUUGGCGAc -3'
miRNA:   3'- -UCGUC-GugCgUGaCCAGAAGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 11247 0.7 0.679191
Target:  5'- uAGCuGCACGUACgaggGGUCg--GGCGAc -3'
miRNA:   3'- -UCGuCGUGCGUGa---CCAGaagCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 12545 0.67 0.837815
Target:  5'- cGCGGCGCGCAC-GG-CUacCGGCGc- -3'
miRNA:   3'- uCGUCGUGCGUGaCCaGAa-GCCGCuu -5'
10860 5' -57.2 NC_002794.1 + 14471 0.68 0.775712
Target:  5'- gAGCGGCGCGCcgcgcucGCUGuUCgcggCGGCGGc -3'
miRNA:   3'- -UCGUCGUGCG-------UGACcAGaa--GCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 32417 0.66 0.861421
Target:  5'- uGCAGCACGaaGCUGaGauUCUgcgCGGCGAu -3'
miRNA:   3'- uCGUCGUGCg-UGAC-C--AGAa--GCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 36966 0.67 0.827058
Target:  5'- aGGCAGUcgcgcaggaggaucGCGCGCaGGUCggcgaGGCGGAc -3'
miRNA:   3'- -UCGUCG--------------UGCGUGaCCAGaag--CCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 37442 1.06 0.003712
Target:  5'- cAGCAGCACGCACUGGUCUUCGGCGAAg -3'
miRNA:   3'- -UCGUCGUGCGUGACCAGAAGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 47788 0.71 0.608148
Target:  5'- gAGCGGC-CGCAgUacacGGUC-UCGGCGAAc -3'
miRNA:   3'- -UCGUCGuGCGUgA----CCAGaAGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 48527 0.68 0.794884
Target:  5'- -aCAGCACGCACaGGcUCgggUCGGcCGAc -3'
miRNA:   3'- ucGUCGUGCGUGaCC-AGa--AGCC-GCUu -5'
10860 5' -57.2 NC_002794.1 + 53770 0.66 0.86889
Target:  5'- cGGCGGCgggacgcccgcgACGCGCccggcgGGUUUcUCGGCGGGa -3'
miRNA:   3'- -UCGUCG------------UGCGUGa-----CCAGA-AGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 54241 0.68 0.794884
Target:  5'- aAGCGGCcgaGCGCGC-GGUCcaCGGCGc- -3'
miRNA:   3'- -UCGUCG---UGCGUGaCCAGaaGCCGCuu -5'
10860 5' -57.2 NC_002794.1 + 56293 0.67 0.845877
Target:  5'- gAGCAcgauGCGCGCGCggucgcGGUCgcUGGCGGc -3'
miRNA:   3'- -UCGU----CGUGCGUGa-----CCAGaaGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 57416 0.67 0.829568
Target:  5'- cGUGGCcgGCGUGCUGGUCggcaCGGCGc- -3'
miRNA:   3'- uCGUCG--UGCGUGACCAGaa--GCCGCuu -5'
10860 5' -57.2 NC_002794.1 + 59226 0.66 0.881101
Target:  5'- cGCGGCGCGCgagcucuucgcgcuGCUGccCUacgUCGGCGAGc -3'
miRNA:   3'- uCGUCGUGCG--------------UGACcaGA---AGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 62098 0.67 0.845877
Target:  5'- cGCGGCGCGCcggacgguCUGGUgCgugUCGaGCGAc -3'
miRNA:   3'- uCGUCGUGCGu-------GACCA-Ga--AGC-CGCUu -5'
10860 5' -57.2 NC_002794.1 + 70042 0.67 0.812549
Target:  5'- cAGCAGCACGUA--GGUCgcccggUCgGGCGGc -3'
miRNA:   3'- -UCGUCGUGCGUgaCCAGa-----AG-CCGCUu -5'
10860 5' -57.2 NC_002794.1 + 87335 0.66 0.876148
Target:  5'- cGGCGGCAgGUuccccagcaGCgGGUCcggCGGCGAGc -3'
miRNA:   3'- -UCGUCGUgCG---------UGaCCAGaa-GCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 91673 0.75 0.399481
Target:  5'- cGCAcGUggGCGCGCUGGUCUUCaGCGGc -3'
miRNA:   3'- uCGU-CG--UGCGUGACCAGAAGcCGCUu -5'
10860 5' -57.2 NC_002794.1 + 107225 0.67 0.845877
Target:  5'- gGGCGGCGCGCGacgGGgg--CGGCGu- -3'
miRNA:   3'- -UCGUCGUGCGUga-CCagaaGCCGCuu -5'
10860 5' -57.2 NC_002794.1 + 107388 0.69 0.748335
Target:  5'- cGGCcgucgGGCugGCGCUGaUCcUCGGCGGc -3'
miRNA:   3'- -UCG-----UCGugCGUGACcAGaAGCCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.