Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10860 | 5' | -57.2 | NC_002794.1 | + | 110676 | 0.75 | 0.408004 |
Target: 5'- uGCAGCACGCugUGGUCgUCGccCGAGu -3' miRNA: 3'- uCGUCGUGCGugACCAGaAGCc-GCUU- -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 112647 | 0.67 | 0.837815 |
Target: 5'- gAGCAGCAgGCAgaGGcUCUcgcaGGCGGc -3' miRNA: 3'- -UCGUCGUgCGUgaCC-AGAag--CCGCUu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 113164 | 0.72 | 0.567768 |
Target: 5'- uGUAGCGCGCGCgGG-CggCGGCGGu -3' miRNA: 3'- uCGUCGUGCGUGaCCaGaaGCCGCUu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 113403 | 0.68 | 0.76732 |
Target: 5'- uGCAGCACccggaGCUGGUCcagcacgUCGGCGu- -3' miRNA: 3'- uCGUCGUGcg---UGACCAGa------AGCCGCuu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 114196 | 0.66 | 0.861421 |
Target: 5'- cAGCGGCGC-CACggccgGcGUCUcCGGCGGc -3' miRNA: 3'- -UCGUCGUGcGUGa----C-CAGAaGCCGCUu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 114544 | 0.67 | 0.845877 |
Target: 5'- gAGCuGCGCGaGCUGuUCUUCGGCc-- -3' miRNA: 3'- -UCGuCGUGCgUGACcAGAAGCCGcuu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 114746 | 0.66 | 0.876148 |
Target: 5'- gAGcCGGCGCcgcccgccgGCGCcGGUCcUCGGCGGc -3' miRNA: 3'- -UC-GUCGUG---------CGUGaCCAGaAGCCGCUu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 117368 | 0.68 | 0.784916 |
Target: 5'- gAGCGGCGggccgccUGCAC-GGUCg-CGGCGAAg -3' miRNA: 3'- -UCGUCGU-------GCGUGaCCAGaaGCCGCUU- -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 118722 | 0.74 | 0.443205 |
Target: 5'- cAGCuGCGCGUACUGGgcgCUgcUCGGCGc- -3' miRNA: 3'- -UCGuCGUGCGUGACCa--GA--AGCCGCuu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 121581 | 0.67 | 0.837815 |
Target: 5'- cAGCGuGaCGgGCGCggGGUCgUUCGGCGAc -3' miRNA: 3'- -UCGU-C-GUgCGUGa-CCAG-AAGCCGCUu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 124393 | 0.69 | 0.728948 |
Target: 5'- cGGCGGCGCGuCGCcGGUCgUCGGgGc- -3' miRNA: 3'- -UCGUCGUGC-GUGaCCAGaAGCCgCuu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 125532 | 0.67 | 0.829568 |
Target: 5'- cGCGGCGaacgaGCGCggcGGcagcgguuUCUUCGGCGAc -3' miRNA: 3'- uCGUCGUg----CGUGa--CC--------AGAAGCCGCUu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 127363 | 0.66 | 0.861421 |
Target: 5'- cGGCGGCGCGgcCGCUcGUg-UCGGCGGAc -3' miRNA: 3'- -UCGUCGUGC--GUGAcCAgaAGCCGCUU- -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 136440 | 0.69 | 0.70923 |
Target: 5'- cGGCGGCugcgucCGCugUugGGUCaggUCGGCGAGg -3' miRNA: 3'- -UCGUCGu-----GCGugA--CCAGa--AGCCGCUU- -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 139733 | 0.73 | 0.499029 |
Target: 5'- cGGCAGCACGC-CgacGGUCaacaggUUGGCGAGa -3' miRNA: 3'- -UCGUCGUGCGuGa--CCAGa-----AGCCGCUU- -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 140088 | 0.71 | 0.587895 |
Target: 5'- cAGCAGgACGUccaUGGUCggCGGCGAu -3' miRNA: 3'- -UCGUCgUGCGug-ACCAGaaGCCGCUu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 140152 | 0.67 | 0.829568 |
Target: 5'- aGGCGGuCGCGCAguauuuacgauuUUGGaUCgggUCGGCGAc -3' miRNA: 3'- -UCGUC-GUGCGU------------GACC-AGa--AGCCGCUu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 147014 | 0.67 | 0.828733 |
Target: 5'- cGGCGGcCGCcgGCGCUcGGUCUaaggacgaagccgUCGGCGGc -3' miRNA: 3'- -UCGUC-GUG--CGUGA-CCAGA-------------AGCCGCUu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 148204 | 0.71 | 0.618305 |
Target: 5'- cGGCgccGGCGCGCGCUcgaucGGUCUccggUCGGCGu- -3' miRNA: 3'- -UCG---UCGUGCGUGA-----CCAGA----AGCCGCuu -5' |
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10860 | 5' | -57.2 | NC_002794.1 | + | 157515 | 0.67 | 0.821143 |
Target: 5'- cGGCGG-ACGCGCUGGggauccagUUGGCGGc -3' miRNA: 3'- -UCGUCgUGCGUGACCaga-----AGCCGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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