miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10860 5' -57.2 NC_002794.1 + 184070 0.68 0.76732
Target:  5'- nAGCGGCACGCGCccacGGUgUagCGGCaGAAc -3'
miRNA:   3'- -UCGUCGUGCGUGa---CCAgAa-GCCG-CUU- -5'
10860 5' -57.2 NC_002794.1 + 184043 0.7 0.658959
Target:  5'- cGCAGCGCGC---GGUCgcgggccgCGGCGAAg -3'
miRNA:   3'- uCGUCGUGCGugaCCAGaa------GCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 179473 0.66 0.883191
Target:  5'- -uCAGCGCGCACUcgaccGGUUgUCGGCc-- -3'
miRNA:   3'- ucGUCGUGCGUGA-----CCAGaAGCCGcuu -5'
10860 5' -57.2 NC_002794.1 + 179211 0.66 0.885947
Target:  5'- cGGCGGCACGaCggacguggcccagauGCaacaGGUCggcgUCGGCGAGa -3'
miRNA:   3'- -UCGUCGUGC-G---------------UGa---CCAGa---AGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 157515 0.67 0.821143
Target:  5'- cGGCGG-ACGCGCUGGggauccagUUGGCGGc -3'
miRNA:   3'- -UCGUCgUGCGUGACCaga-----AGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 148204 0.71 0.618305
Target:  5'- cGGCgccGGCGCGCGCUcgaucGGUCUccggUCGGCGu- -3'
miRNA:   3'- -UCG---UCGUGCGUGA-----CCAGA----AGCCGCuu -5'
10860 5' -57.2 NC_002794.1 + 147014 0.67 0.828733
Target:  5'- cGGCGGcCGCcgGCGCUcGGUCUaaggacgaagccgUCGGCGGc -3'
miRNA:   3'- -UCGUC-GUG--CGUGA-CCAGA-------------AGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 140152 0.67 0.829568
Target:  5'- aGGCGGuCGCGCAguauuuacgauuUUGGaUCgggUCGGCGAc -3'
miRNA:   3'- -UCGUC-GUGCGU------------GACC-AGa--AGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 140088 0.71 0.587895
Target:  5'- cAGCAGgACGUccaUGGUCggCGGCGAu -3'
miRNA:   3'- -UCGUCgUGCGug-ACCAGaaGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 139733 0.73 0.499029
Target:  5'- cGGCAGCACGC-CgacGGUCaacaggUUGGCGAGa -3'
miRNA:   3'- -UCGUCGUGCGuGa--CCAGa-----AGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 136440 0.69 0.70923
Target:  5'- cGGCGGCugcgucCGCugUugGGUCaggUCGGCGAGg -3'
miRNA:   3'- -UCGUCGu-----GCGugA--CCAGa--AGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 127363 0.66 0.861421
Target:  5'- cGGCGGCGCGgcCGCUcGUg-UCGGCGGAc -3'
miRNA:   3'- -UCGUCGUGC--GUGAcCAgaAGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 125532 0.67 0.829568
Target:  5'- cGCGGCGaacgaGCGCggcGGcagcgguuUCUUCGGCGAc -3'
miRNA:   3'- uCGUCGUg----CGUGa--CC--------AGAAGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 124393 0.69 0.728948
Target:  5'- cGGCGGCGCGuCGCcGGUCgUCGGgGc- -3'
miRNA:   3'- -UCGUCGUGC-GUGaCCAGaAGCCgCuu -5'
10860 5' -57.2 NC_002794.1 + 121581 0.67 0.837815
Target:  5'- cAGCGuGaCGgGCGCggGGUCgUUCGGCGAc -3'
miRNA:   3'- -UCGU-C-GUgCGUGa-CCAG-AAGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 118722 0.74 0.443205
Target:  5'- cAGCuGCGCGUACUGGgcgCUgcUCGGCGc- -3'
miRNA:   3'- -UCGuCGUGCGUGACCa--GA--AGCCGCuu -5'
10860 5' -57.2 NC_002794.1 + 117368 0.68 0.784916
Target:  5'- gAGCGGCGggccgccUGCAC-GGUCg-CGGCGAAg -3'
miRNA:   3'- -UCGUCGU-------GCGUGaCCAGaaGCCGCUU- -5'
10860 5' -57.2 NC_002794.1 + 114746 0.66 0.876148
Target:  5'- gAGcCGGCGCcgcccgccgGCGCcGGUCcUCGGCGGc -3'
miRNA:   3'- -UC-GUCGUG---------CGUGaCCAGaAGCCGCUu -5'
10860 5' -57.2 NC_002794.1 + 114544 0.67 0.845877
Target:  5'- gAGCuGCGCGaGCUGuUCUUCGGCc-- -3'
miRNA:   3'- -UCGuCGUGCgUGACcAGAAGCCGcuu -5'
10860 5' -57.2 NC_002794.1 + 114196 0.66 0.861421
Target:  5'- cAGCGGCGC-CACggccgGcGUCUcCGGCGGc -3'
miRNA:   3'- -UCGUCGUGcGUGa----C-CAGAaGCCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.