miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10861 3' -56.6 NC_002794.1 + 58334 0.66 0.952976
Target:  5'- cGCgUGCUCGuCGG-GAACcuGCCGcUCGGc -3'
miRNA:   3'- -UGgACGAGCuGCUgCUUG--CGGC-AGCC- -5'
10861 3' -56.6 NC_002794.1 + 192656 0.66 0.952976
Target:  5'- cGCCgcgcGCUCGcGCGAcuCGAAgcgccggcCGCCGUCGu -3'
miRNA:   3'- -UGGa---CGAGC-UGCU--GCUU--------GCGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 116083 0.66 0.952976
Target:  5'- ---cGCUCGgcGCGGCGGuCGUCGcCGGg -3'
miRNA:   3'- uggaCGAGC--UGCUGCUuGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 149723 0.66 0.952976
Target:  5'- cGCCUGcCUCGcuACGGCG--UGCCGgUGGa -3'
miRNA:   3'- -UGGAC-GAGC--UGCUGCuuGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 70862 0.66 0.952976
Target:  5'- gGCCUccuccggcgGCggcagCGGCGGCuccucGAGCGCCagGUCGGu -3'
miRNA:   3'- -UGGA---------CGa----GCUGCUG-----CUUGCGG--CAGCC- -5'
10861 3' -56.6 NC_002794.1 + 48051 0.66 0.952976
Target:  5'- uGCgUGCUgggcaCGGCGcUGAugGCCGgccagCGGg -3'
miRNA:   3'- -UGgACGA-----GCUGCuGCUugCGGCa----GCC- -5'
10861 3' -56.6 NC_002794.1 + 35268 0.66 0.949432
Target:  5'- aACCUGCggcugaaacaccggGugGGCGucguGCGCCcUCGGa -3'
miRNA:   3'- -UGGACGag------------CugCUGCu---UGCGGcAGCC- -5'
10861 3' -56.6 NC_002794.1 + 134188 0.66 0.949027
Target:  5'- cACCUcGUaUCGGCuGGUGGGgGCCGUCGGu -3'
miRNA:   3'- -UGGA-CG-AGCUG-CUGCUUgCGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 146516 0.66 0.949027
Target:  5'- cCCUGCUCGggaccGCGACGGAU-CCGgaGGa -3'
miRNA:   3'- uGGACGAGC-----UGCUGCUUGcGGCagCC- -5'
10861 3' -56.6 NC_002794.1 + 31955 0.66 0.946556
Target:  5'- uUCUGCgucugguugucguaCGACGucuCGAGCGCC-UCGGu -3'
miRNA:   3'- uGGACGa-------------GCUGCu--GCUUGCGGcAGCC- -5'
10861 3' -56.6 NC_002794.1 + 46235 0.66 0.946556
Target:  5'- aGCUcGCUCGcCGGCGGcucguccgcuuccucGgGCCGUCGa -3'
miRNA:   3'- -UGGaCGAGCuGCUGCU---------------UgCGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 127316 0.66 0.945291
Target:  5'- gGCC-GuCUCGACGACGGagacgaGCGCCGcugccgagacgcucgCGGc -3'
miRNA:   3'- -UGGaC-GAGCUGCUGCU------UGCGGCa--------------GCC- -5'
10861 3' -56.6 NC_002794.1 + 11110 0.66 0.944865
Target:  5'- uCCUGCUCuACGGCGugcuGCGCCa---- -3'
miRNA:   3'- uGGACGAGcUGCUGCu---UGCGGcagcc -5'
10861 3' -56.6 NC_002794.1 + 62492 0.66 0.944865
Target:  5'- cGCgaGUg-GACGGCGGgcgGCGCCGcCGGc -3'
miRNA:   3'- -UGgaCGagCUGCUGCU---UGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 59181 0.66 0.944865
Target:  5'- -gCUGCUgGACcccguGGCGGucgacGCGCaCGUCGGc -3'
miRNA:   3'- ugGACGAgCUG-----CUGCU-----UGCG-GCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 192809 0.66 0.944865
Target:  5'- cACgUGCUCcACGugGAACagGCCGgUCGc -3'
miRNA:   3'- -UGgACGAGcUGCugCUUG--CGGC-AGCc -5'
10861 3' -56.6 NC_002794.1 + 71756 0.66 0.944865
Target:  5'- cGCCgGCUCuucCGAcCGGuccGCGCCGUCGc -3'
miRNA:   3'- -UGGaCGAGcu-GCU-GCU---UGCGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 30079 0.66 0.944865
Target:  5'- cGCCcGgUCGACGAgGcGCGCgGcCGGu -3'
miRNA:   3'- -UGGaCgAGCUGCUgCuUGCGgCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 128849 0.66 0.944865
Target:  5'- cGCCgGCgUCGACGACGccgcugcCGCCGUg-- -3'
miRNA:   3'- -UGGaCG-AGCUGCUGCuu-----GCGGCAgcc -5'
10861 3' -56.6 NC_002794.1 + 150264 0.66 0.944865
Target:  5'- uGCC-GCUCGGuCGACuGACGCCG-Ca- -3'
miRNA:   3'- -UGGaCGAGCU-GCUGcUUGCGGCaGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.