miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10861 3' -56.6 NC_002794.1 + 36621 1.09 0.004144
Target:  5'- gACCUGCUCGACGACGAACGCCGUCGGc -3'
miRNA:   3'- -UGGACGAGCUGCUGCUUGCGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 60024 0.85 0.156752
Target:  5'- gACCUGCUCGACGcCG-ACGCCGUCu- -3'
miRNA:   3'- -UGGACGAGCUGCuGCuUGCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 145795 0.78 0.391403
Target:  5'- gGCCgGCUCgGACGACGAcgcCGCCGcCGGc -3'
miRNA:   3'- -UGGaCGAG-CUGCUGCUu--GCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 78000 0.77 0.399534
Target:  5'- gGCgUUGUUcCGGCGGCG-GCGCCGUCGGg -3'
miRNA:   3'- -UG-GACGA-GCUGCUGCuUGCGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 93984 0.77 0.407773
Target:  5'- gACCgcGCUCGGCG-CGGACGCCGgcgcCGGc -3'
miRNA:   3'- -UGGa-CGAGCUGCuGCUUGCGGCa---GCC- -5'
10861 3' -56.6 NC_002794.1 + 135465 0.77 0.424566
Target:  5'- gGCCcGCggcCGACGACGAcgcCGCCGUCGa -3'
miRNA:   3'- -UGGaCGa--GCUGCUGCUu--GCGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 74521 0.76 0.450511
Target:  5'- cGCCUGCcucccCGACGACGucccgcACGCCGUCa- -3'
miRNA:   3'- -UGGACGa----GCUGCUGCu-----UGCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 126391 0.76 0.459351
Target:  5'- gGCCUGCgCGGCGGCGuGCGCgG-CGGu -3'
miRNA:   3'- -UGGACGaGCUGCUGCuUGCGgCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 115233 0.76 0.459351
Target:  5'- gAUCUGgcuCUUGACGACGuccACGUCGUCGGg -3'
miRNA:   3'- -UGGAC---GAGCUGCUGCu--UGCGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 187085 0.75 0.495595
Target:  5'- -gCUGCUCGccACGugGAACaGCCcGUCGGu -3'
miRNA:   3'- ugGACGAGC--UGCugCUUG-CGG-CAGCC- -5'
10861 3' -56.6 NC_002794.1 + 61554 0.75 0.495595
Target:  5'- cGCC-GCcgCGGCGGCGGcCGCCGUCGa -3'
miRNA:   3'- -UGGaCGa-GCUGCUGCUuGCGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 105707 0.75 0.495595
Target:  5'- cGCCUccGCUCGA-GGCGAucgcgGCgGCCGUCGGg -3'
miRNA:   3'- -UGGA--CGAGCUgCUGCU-----UG-CGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 67421 0.75 0.504859
Target:  5'- cGCCaGCgUCGGCGGCGugucGCGCCGcuUCGGg -3'
miRNA:   3'- -UGGaCG-AGCUGCUGCu---UGCGGC--AGCC- -5'
10861 3' -56.6 NC_002794.1 + 180900 0.75 0.533078
Target:  5'- gGCCgcgGaCUCGGCcGCGGucucgccgGCGCCGUCGGa -3'
miRNA:   3'- -UGGa--C-GAGCUGcUGCU--------UGCGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 60952 0.75 0.533078
Target:  5'- cGCCUGCUCGACGAgcgccgggccuaCGcGCGCCucCGGa -3'
miRNA:   3'- -UGGACGAGCUGCU------------GCuUGCGGcaGCC- -5'
10861 3' -56.6 NC_002794.1 + 145562 0.75 0.542612
Target:  5'- gACCgGUUCG-CgGACGAGCGCCGaCGGa -3'
miRNA:   3'- -UGGaCGAGCuG-CUGCUUGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 46310 0.74 0.552201
Target:  5'- uCCgaGCgCGGCGGCGAcgGCGCCGUCGc -3'
miRNA:   3'- uGGa-CGaGCUGCUGCU--UGCGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 106347 0.74 0.571526
Target:  5'- cGCCgGgUCGACGGCGGgcggGCGCCGguucgcgCGGa -3'
miRNA:   3'- -UGGaCgAGCUGCUGCU----UGCGGCa------GCC- -5'
10861 3' -56.6 NC_002794.1 + 128921 0.74 0.571526
Target:  5'- gACCUGgUcgcCGACGACGAACGuCCGgUGGa -3'
miRNA:   3'- -UGGACgA---GCUGCUGCUUGC-GGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 49594 0.74 0.591009
Target:  5'- cCCgaucGCgaucggCGACGGCGGGCGCCGgCGGc -3'
miRNA:   3'- uGGa---CGa-----GCUGCUGCUUGCGGCaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.