miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10861 3' -56.6 NC_002794.1 + 58981 0.74 0.600795
Target:  5'- cGCCUGCgCGACGACGAgcugGCGCUG-Ca- -3'
miRNA:   3'- -UGGACGaGCUGCUGCU----UGCGGCaGcc -5'
10861 3' -56.6 NC_002794.1 + 19490 0.74 0.600795
Target:  5'- cGCCcGCacCGACGACGGcggaggucGCGCCGcUCGGa -3'
miRNA:   3'- -UGGaCGa-GCUGCUGCU--------UGCGGC-AGCC- -5'
10861 3' -56.6 NC_002794.1 + 34078 0.73 0.610602
Target:  5'- uCCcGC-CGGCGGcCGGGCaGCCGUCGGg -3'
miRNA:   3'- uGGaCGaGCUGCU-GCUUG-CGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 98951 0.73 0.630255
Target:  5'- gGCUgggGCUCG-UGcUGGGCGCCGUCGGc -3'
miRNA:   3'- -UGGa--CGAGCuGCuGCUUGCGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 113586 0.73 0.640086
Target:  5'- uCCUGCaCGACGGCGcggaguuucuccAGCGCCG-CGGc -3'
miRNA:   3'- uGGACGaGCUGCUGC------------UUGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 58502 0.73 0.640086
Target:  5'- uACCUGCUCGACGugcucguccACGGgcACGCCGa-GGc -3'
miRNA:   3'- -UGGACGAGCUGC---------UGCU--UGCGGCagCC- -5'
10861 3' -56.6 NC_002794.1 + 194934 0.73 0.640086
Target:  5'- cACCaGCUcCGACGGCG-ACGUCGUCa- -3'
miRNA:   3'- -UGGaCGA-GCUGCUGCuUGCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 91214 0.73 0.640086
Target:  5'- -aCgGCgacgCGACGGCGGACggcgcggcgGCCGUCGGg -3'
miRNA:   3'- ugGaCGa---GCUGCUGCUUG---------CGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 78376 0.73 0.64893
Target:  5'- gGCCUGCUccgccagcgacggCGACGACGAGgccuCGCCG-CGa -3'
miRNA:   3'- -UGGACGA-------------GCUGCUGCUU----GCGGCaGCc -5'
10861 3' -56.6 NC_002794.1 + 137402 0.72 0.659725
Target:  5'- gUCUGUcCGGCGuccGCGGACGCCG-CGGa -3'
miRNA:   3'- uGGACGaGCUGC---UGCUUGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 64791 0.72 0.669518
Target:  5'- cGCCgGUUCcGCGGCGAgcgACGCCG-CGGa -3'
miRNA:   3'- -UGGaCGAGcUGCUGCU---UGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 100212 0.72 0.669518
Target:  5'- gUCUGCUCGACGA-GGGCGUCGaggucuucgaggUCGGc -3'
miRNA:   3'- uGGACGAGCUGCUgCUUGCGGC------------AGCC- -5'
10861 3' -56.6 NC_002794.1 + 120441 0.72 0.669518
Target:  5'- ---aGC-CGGCGugGAACGCCGcgUCGGc -3'
miRNA:   3'- uggaCGaGCUGCugCUUGCGGC--AGCC- -5'
10861 3' -56.6 NC_002794.1 + 62059 0.72 0.679282
Target:  5'- gGCCgacGC-CGGCGGCG-ACGCCGgCGGc -3'
miRNA:   3'- -UGGa--CGaGCUGCUGCuUGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 145746 0.72 0.689011
Target:  5'- cGCCgGCaUCGACGGCGAccccgagcgaGCGCCacgCGGa -3'
miRNA:   3'- -UGGaCG-AGCUGCUGCU----------UGCGGca-GCC- -5'
10861 3' -56.6 NC_002794.1 + 12216 0.72 0.689011
Target:  5'- uGCCggcgGCgUCGGCGGCGccggcGGCGCCGUCc- -3'
miRNA:   3'- -UGGa---CG-AGCUGCUGC-----UUGCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 44425 0.72 0.698696
Target:  5'- cGCCgagcgGCUCGACGACaccGGCGCgcccgcccggaCGUCGGc -3'
miRNA:   3'- -UGGa----CGAGCUGCUGc--UUGCG-----------GCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 155908 0.72 0.698696
Target:  5'- gACCgGCUCGACGuGCGGAgccgggugcuUGCCGUCa- -3'
miRNA:   3'- -UGGaCGAGCUGC-UGCUU----------GCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 96926 0.72 0.698696
Target:  5'- ---cGC-CGGCGACaGcACGCCGUCGGa -3'
miRNA:   3'- uggaCGaGCUGCUG-CuUGCGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 63683 0.72 0.705445
Target:  5'- gGCCgcgGCgaCGACGAUGAcgacgacggcgccgGCGCCGcCGGa -3'
miRNA:   3'- -UGGa--CGa-GCUGCUGCU--------------UGCGGCaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.