miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10861 3' -56.6 NC_002794.1 + 192809 0.66 0.944865
Target:  5'- cACgUGCUCcACGugGAACagGCCGgUCGc -3'
miRNA:   3'- -UGgACGAGcUGCugCUUG--CGGC-AGCc -5'
10861 3' -56.6 NC_002794.1 + 71756 0.66 0.944865
Target:  5'- cGCCgGCUCuucCGAcCGGuccGCGCCGUCGc -3'
miRNA:   3'- -UGGaCGAGcu-GCU-GCU---UGCGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 30079 0.66 0.944865
Target:  5'- cGCCcGgUCGACGAgGcGCGCgGcCGGu -3'
miRNA:   3'- -UGGaCgAGCUGCUgCuUGCGgCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 128849 0.66 0.944865
Target:  5'- cGCCgGCgUCGACGACGccgcugcCGCCGUg-- -3'
miRNA:   3'- -UGGaCG-AGCUGCUGCuu-----GCGGCAgcc -5'
10861 3' -56.6 NC_002794.1 + 82040 0.66 0.944865
Target:  5'- cGCgUGggCGGCGGCGGcgGCGgCGUCGu -3'
miRNA:   3'- -UGgACgaGCUGCUGCU--UGCgGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 21364 0.66 0.940486
Target:  5'- aACCaGagacgCGGCGGCGGcCGCCGUCu- -3'
miRNA:   3'- -UGGaCga---GCUGCUGCUuGCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 105905 0.66 0.940486
Target:  5'- cGCC-GCggCGGCGGCGcuaccgcCGCCGcCGGa -3'
miRNA:   3'- -UGGaCGa-GCUGCUGCuu-----GCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 82121 0.66 0.940486
Target:  5'- aGCCUcCUCGGCGugGGcgucACGUgGgCGGa -3'
miRNA:   3'- -UGGAcGAGCUGCugCU----UGCGgCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 151703 0.66 0.940486
Target:  5'- cGCCgGCcgagcgcgccagUCGcGCGAaGGACGUCGUCGGc -3'
miRNA:   3'- -UGGaCG------------AGC-UGCUgCUUGCGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 111640 0.66 0.940486
Target:  5'- cGCCggucggGCgccgCGGCcGCGGccACGCCcGUCGGa -3'
miRNA:   3'- -UGGa-----CGa---GCUGcUGCU--UGCGG-CAGCC- -5'
10861 3' -56.6 NC_002794.1 + 188248 0.66 0.940486
Target:  5'- gACCgGCggCGGCGGCGGuaGCGgCGggcCGGg -3'
miRNA:   3'- -UGGaCGa-GCUGCUGCU--UGCgGCa--GCC- -5'
10861 3' -56.6 NC_002794.1 + 99083 0.66 0.940036
Target:  5'- uCCUGCUcuaucagCGACaGCGGAgUGCCGUgCGGc -3'
miRNA:   3'- uGGACGA-------GCUGcUGCUU-GCGGCA-GCC- -5'
10861 3' -56.6 NC_002794.1 + 49406 0.66 0.935888
Target:  5'- gGCCacgGCggccgCGGCGGCGGcgGCCGUCa- -3'
miRNA:   3'- -UGGa--CGa----GCUGCUGCUugCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 44324 0.66 0.935888
Target:  5'- cGCgaGCgCGGCGGCGAagaagacgGCGCCGgCGa -3'
miRNA:   3'- -UGgaCGaGCUGCUGCU--------UGCGGCaGCc -5'
10861 3' -56.6 NC_002794.1 + 64829 0.66 0.935888
Target:  5'- aGCCgGCgcCGACGAcCGGACGgCG-CGGc -3'
miRNA:   3'- -UGGaCGa-GCUGCU-GCUUGCgGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 180009 0.66 0.935888
Target:  5'- gGCCcgGCcaCGACGACGGccGCGgCCGUCc- -3'
miRNA:   3'- -UGGa-CGa-GCUGCUGCU--UGC-GGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 141602 0.66 0.935888
Target:  5'- cGCCgggcgGCUCGGCGACcggcuCGCgGUCu- -3'
miRNA:   3'- -UGGa----CGAGCUGCUGcuu--GCGgCAGcc -5'
10861 3' -56.6 NC_002794.1 + 112821 0.66 0.935888
Target:  5'- gUCUGCUCGGcCGcCGAGuacggcUGCuCGUCGGc -3'
miRNA:   3'- uGGACGAGCU-GCuGCUU------GCG-GCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 101430 0.66 0.935888
Target:  5'- -gCUGCgCGACGAUccggGGACGCCGgcgCGc -3'
miRNA:   3'- ugGACGaGCUGCUG----CUUGCGGCa--GCc -5'
10861 3' -56.6 NC_002794.1 + 59500 0.66 0.935888
Target:  5'- uACCUGCgccaCGACGGCGGcuuccCGCUGcaccCGGc -3'
miRNA:   3'- -UGGACGa---GCUGCUGCUu----GCGGCa---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.