miRNA display CGI


Results 41 - 60 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10861 3' -56.6 NC_002794.1 + 101430 0.66 0.935888
Target:  5'- -gCUGCgCGACGAUccggGGACGCCGgcgCGc -3'
miRNA:   3'- ugGACGaGCUGCUG----CUUGCGGCa--GCc -5'
10861 3' -56.6 NC_002794.1 + 121458 0.66 0.935888
Target:  5'- cGCCgucgGgUCGACcgucgaGACGAcCGCCGguUCGGa -3'
miRNA:   3'- -UGGa---CgAGCUG------CUGCUuGCGGC--AGCC- -5'
10861 3' -56.6 NC_002794.1 + 189031 0.66 0.935416
Target:  5'- aGCC-GCUCGaccgccaGCGGCGGGCuGCgCGUCGc -3'
miRNA:   3'- -UGGaCGAGC-------UGCUGCUUG-CG-GCAGCc -5'
10861 3' -56.6 NC_002794.1 + 12001 0.66 0.931071
Target:  5'- -gCUGCUgUGugGACuGAuguGCGCCGcCGGc -3'
miRNA:   3'- ugGACGA-GCugCUG-CU---UGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 14691 0.66 0.931071
Target:  5'- cGCgCUGCUCcuGACGGCGuggggAGCGCUGcucgCGGc -3'
miRNA:   3'- -UG-GACGAG--CUGCUGC-----UUGCGGCa---GCC- -5'
10861 3' -56.6 NC_002794.1 + 62626 0.66 0.931071
Target:  5'- -gCUGCUCugGGCGuCGGACcCCGUCGc -3'
miRNA:   3'- ugGACGAG--CUGCuGCUUGcGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 112340 0.66 0.931071
Target:  5'- cGCCgGC-CGGCGGCGccGGCGgCGgggCGGg -3'
miRNA:   3'- -UGGaCGaGCUGCUGC--UUGCgGCa--GCC- -5'
10861 3' -56.6 NC_002794.1 + 130325 0.66 0.931071
Target:  5'- gGCCgagacgGCggacgaaggCGGCGACGAcgACGCCGaCGa -3'
miRNA:   3'- -UGGa-----CGa--------GCUGCUGCU--UGCGGCaGCc -5'
10861 3' -56.6 NC_002794.1 + 189836 0.66 0.931071
Target:  5'- cGCCacagcgggGuCUCGGCcGCGGA-GCCGUCGGc -3'
miRNA:   3'- -UGGa-------C-GAGCUGcUGCUUgCGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 182533 0.66 0.931071
Target:  5'- cACCaGCgCGGCaGCGAcuGCGCCG-CGGc -3'
miRNA:   3'- -UGGaCGaGCUGcUGCU--UGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 130450 0.67 0.926033
Target:  5'- uCCgUGUUgGGCGGCGAgGCGCUGgCGGc -3'
miRNA:   3'- uGG-ACGAgCUGCUGCU-UGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 34328 0.67 0.926033
Target:  5'- gGCCguccGCaaGGCGACGGccGCGCCGUUc- -3'
miRNA:   3'- -UGGa---CGagCUGCUGCU--UGCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 143401 0.67 0.926033
Target:  5'- -gCUGCUCGAcCGGCGcGgGCCGggCGa -3'
miRNA:   3'- ugGACGAGCU-GCUGCuUgCGGCa-GCc -5'
10861 3' -56.6 NC_002794.1 + 113929 0.67 0.926033
Target:  5'- gGCC-GCcgaGGCGACGGGcCGCUGcCGGg -3'
miRNA:   3'- -UGGaCGag-CUGCUGCUU-GCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 34841 0.67 0.926033
Target:  5'- cGCCggaGCgggCGuCGgaGCGGGCGCCG-CGGg -3'
miRNA:   3'- -UGGa--CGa--GCuGC--UGCUUGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 23866 0.67 0.925517
Target:  5'- cACCggGCUUcaaaccgGACcGCGAACGCCGagGGc -3'
miRNA:   3'- -UGGa-CGAG-------CUGcUGCUUGCGGCagCC- -5'
10861 3' -56.6 NC_002794.1 + 146974 0.67 0.920774
Target:  5'- cGCCUGUcgCGAgGuCG-GCGCCGcCGGc -3'
miRNA:   3'- -UGGACGa-GCUgCuGCuUGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 23991 0.67 0.920774
Target:  5'- cACCgucGCUcCGucCGACGGGcCGCCGUCa- -3'
miRNA:   3'- -UGGa--CGA-GCu-GCUGCUU-GCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 182581 0.67 0.920774
Target:  5'- uCCgUGCgggCGACGAUGGucGCGuuGUCGc -3'
miRNA:   3'- uGG-ACGa--GCUGCUGCU--UGCggCAGCc -5'
10861 3' -56.6 NC_002794.1 + 122779 0.67 0.920774
Target:  5'- cGCgaGCggccUCGACGGCGuggaguuCGCCGUCa- -3'
miRNA:   3'- -UGgaCG----AGCUGCUGCuu-----GCGGCAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.