miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10861 3' -56.6 NC_002794.1 + 11110 0.66 0.944865
Target:  5'- uCCUGCUCuACGGCGugcuGCGCCa---- -3'
miRNA:   3'- uGGACGAGcUGCUGCu---UGCGGcagcc -5'
10861 3' -56.6 NC_002794.1 + 12001 0.66 0.931071
Target:  5'- -gCUGCUgUGugGACuGAuguGCGCCGcCGGc -3'
miRNA:   3'- ugGACGA-GCugCUG-CU---UGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 12181 0.68 0.89755
Target:  5'- cGCCgacGC-CGccGCGGcCGGGCGCCGcUCGGa -3'
miRNA:   3'- -UGGa--CGaGC--UGCU-GCUUGCGGC-AGCC- -5'
10861 3' -56.6 NC_002794.1 + 12216 0.72 0.689011
Target:  5'- uGCCggcgGCgUCGGCGGCGccggcGGCGCCGUCc- -3'
miRNA:   3'- -UGGa---CG-AGCUGCUGC-----UUGCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 14504 0.7 0.782567
Target:  5'- gGCCcgcGCUCG-CGGCGcucguGGCGCCGcUCGGc -3'
miRNA:   3'- -UGGa--CGAGCuGCUGC-----UUGCGGC-AGCC- -5'
10861 3' -56.6 NC_002794.1 + 14691 0.66 0.931071
Target:  5'- cGCgCUGCUCcuGACGGCGuggggAGCGCUGcucgCGGc -3'
miRNA:   3'- -UG-GACGAG--CUGCUGC-----UUGCGGCa---GCC- -5'
10861 3' -56.6 NC_002794.1 + 19490 0.74 0.600795
Target:  5'- cGCCcGCacCGACGACGGcggaggucGCGCCGcUCGGa -3'
miRNA:   3'- -UGGaCGa-GCUGCUGCU--------UGCGGC-AGCC- -5'
10861 3' -56.6 NC_002794.1 + 20534 0.68 0.884651
Target:  5'- gACUgGCguucgCGACGACGGGCgaccggaucccGCCGUCGc -3'
miRNA:   3'- -UGGaCGa----GCUGCUGCUUG-----------CGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 20978 0.67 0.920774
Target:  5'- cACCgGCagCGGCGGCGGcaGCGaCCG-CGGc -3'
miRNA:   3'- -UGGaCGa-GCUGCUGCU--UGC-GGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 21364 0.66 0.940486
Target:  5'- aACCaGagacgCGGCGGCGGcCGCCGUCu- -3'
miRNA:   3'- -UGGaCga---GCUGCUGCUuGCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 21512 0.67 0.909598
Target:  5'- uCCgGCUCGAgGACGGGCGga-UCGGg -3'
miRNA:   3'- uGGaCGAGCUgCUGCUUGCggcAGCC- -5'
10861 3' -56.6 NC_002794.1 + 21901 0.67 0.906074
Target:  5'- gGCCUGCgUCggugguggcggcggaGACGACGGcggcggcgcgGCGCuCGUCGa -3'
miRNA:   3'- -UGGACG-AG---------------CUGCUGCU----------UGCG-GCAGCc -5'
10861 3' -56.6 NC_002794.1 + 23866 0.67 0.925517
Target:  5'- cACCggGCUUcaaaccgGACcGCGAACGCCGagGGc -3'
miRNA:   3'- -UGGa-CGAG-------CUGcUGCUUGCGGCagCC- -5'
10861 3' -56.6 NC_002794.1 + 23991 0.67 0.920774
Target:  5'- cACCgucGCUcCGucCGACGGGcCGCCGUCa- -3'
miRNA:   3'- -UGGa--CGA-GCu-GCUGCUU-GCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 26122 0.68 0.891206
Target:  5'- gGCCUGcCUCGACGACcGACGaacaGUCc- -3'
miRNA:   3'- -UGGAC-GAGCUGCUGcUUGCgg--CAGcc -5'
10861 3' -56.6 NC_002794.1 + 30079 0.66 0.944865
Target:  5'- cGCCcGgUCGACGAgGcGCGCgGcCGGu -3'
miRNA:   3'- -UGGaCgAGCUGCUgCuUGCGgCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 31955 0.66 0.946556
Target:  5'- uUCUGCgucugguugucguaCGACGucuCGAGCGCC-UCGGu -3'
miRNA:   3'- uGGACGa-------------GCUGCu--GCUUGCGGcAGCC- -5'
10861 3' -56.6 NC_002794.1 + 32258 0.66 0.944865
Target:  5'- uGCUggcGCUCGACGGCcg--GCCGaUCGGc -3'
miRNA:   3'- -UGGa--CGAGCUGCUGcuugCGGC-AGCC- -5'
10861 3' -56.6 NC_002794.1 + 33694 0.7 0.773638
Target:  5'- cGCCUGUUCGugG-CGGGCgaGCCGcUGGu -3'
miRNA:   3'- -UGGACGAGCugCuGCUUG--CGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 34078 0.73 0.610602
Target:  5'- uCCcGC-CGGCGGcCGGGCaGCCGUCGGg -3'
miRNA:   3'- uGGaCGaGCUGCU-GCUUG-CGGCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.